Strain Fitness in Pseudomonas sp. RS175 around PFR28_04712

Experiment: L-Malic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C) 10 mM
5,367,662	-		PFR28_04710	0.44	-0.4
5,367,842	-		PFR28_04710	0.61	-0.7
5,367,842	-		PFR28_04710	0.61	-0.0
5,367,842	-		PFR28_04710	0.61	-0.4
5,367,842	-		PFR28_04710	0.61	+0.6
5,367,842	-		PFR28_04710	0.61	+0.2
5,367,847	-		PFR28_04710	0.62	-0.8
5,367,883	+		PFR28_04710	0.66	+0.8
5,367,883	+		PFR28_04710	0.66	+3.3
5,367,883	+		PFR28_04710	0.66	+0.5
5,367,883	+		PFR28_04710	0.66	-1.6
5,367,884	-		PFR28_04710	0.66	+1.1
5,367,884	-		PFR28_04710	0.66	-0.1
5,367,884	-		PFR28_04710	0.66	+1.0
5,367,884	-		PFR28_04710	0.66	-0.6
5,367,884	-		PFR28_04710	0.66	+0.3
5,367,955	+		PFR28_04710	0.73	+0.8
5,367,956	-		PFR28_04710	0.73	+1.1
5,367,956	-		PFR28_04710	0.73	-1.3
5,368,168	+				-0.2
5,368,168	+				+0.2
5,368,169	-				+1.0
5,368,169	-				+0.8
5,368,169	-				-0.1
5,368,169	-				-2.2
5,368,195	+				-1.2
5,368,195	+				-0.8
5,368,195	+				+0.2
5,368,195	+				+0.8
5,368,196	-				-1.5
5,368,196	-				+1.9
5,368,196	-				-0.3
5,368,196	-				+0.2
5,368,196	-				-0.5
5,368,271	+				-0.2
5,368,271	+				-1.1
5,368,271	+				+0.6
5,368,271	+				-0.8
5,368,272	-				+0.8
5,368,272	-				+1.6
5,368,272	-				-0.7
5,368,272	-				-1.6
5,368,272	-				-0.2
5,368,290	+				-0.3
5,368,290	+				-0.2
5,368,290	+				+0.1
5,368,290	+				-0.4
5,368,291	-				-1.6
5,368,291	-				-0.5
5,368,291	-				+0.1
5,368,292	+				-1.0
5,368,293	-				-1.6
5,368,293	-				-1.3
5,368,308	+		PFR28_04711	0.12	-0.0
5,368,308	+		PFR28_04711	0.12	-0.6
5,368,308	+		PFR28_04711	0.12	+1.3
5,368,309	-		PFR28_04711	0.12	-3.0
5,368,309	-		PFR28_04711	0.12	+0.7
5,368,309	-		PFR28_04711	0.12	+0.7
5,368,309	-		PFR28_04711	0.12	-3.1
5,368,309	-		PFR28_04711	0.12	-0.1
5,368,392	+		PFR28_04711	0.50	+0.6
5,368,392	+		PFR28_04711	0.50	+0.1
5,368,393	-		PFR28_04711	0.50	-2.3
5,368,474	+		PFR28_04711	0.86	+0.2
5,368,626	+				+0.5
5,368,626	+				-1.1
5,368,626	+				+0.3
5,368,626	+				+0.0
5,368,626	+				-0.3
5,368,626	+				+1.2
5,368,627	-				+1.6
5,368,627	-				-1.6
5,368,689	+		PFR28_04712	0.31	-2.8
5,368,786	-		PFR28_04712	0.76	-0.9
5,368,815	+				+1.6
5,368,815	+				+1.0
5,368,815	+				-0.5
5,368,816	-				-0.5
5,368,817	+				-1.4
5,368,817	+				-1.5
5,368,817	+				+0.8
5,368,817	+				+0.7
5,368,817	+				-0.9
5,368,817	+				-1.0
5,368,817	+				-1.3
5,368,817	+				-0.1
5,368,817	+				-1.6
5,368,817	+				-1.2
5,368,817	+				-0.2
5,368,818	-				-0.8
5,368,818	-				+1.7
5,368,818	-				+0.5
5,368,818	-				-1.7
5,368,818	-				-0.5
5,368,818	-				-1.8
5,368,818	-				+0.1
5,368,818	-				-0.7
5,368,818	-				-0.8
5,368,818	-				-0.5
5,368,818	-				-0.3
5,368,818	-				-1.2
5,368,858	+				-0.5
5,368,859	-				+0.9
5,368,866	+				-0.3
5,368,866	+				-1.0
5,368,866	+				+0.9
5,368,866	+				+0.2
5,368,867	-				-0.0
5,368,867	-				-0.2
5,368,867	-				-0.7
5,368,867	-				-2.3
5,368,867	-				+0.1
5,368,867	-				-1.0
5,368,867	-				-0.3
5,368,885	+				+0.5
5,368,885	+				-0.1
5,368,885	+				-1.1
5,368,885	+				+0.4
5,368,886	-				-0.8
5,368,886	-				-1.7
5,368,886	-				-0.8
5,368,886	-				-0.7
5,368,886	-				-0.7
5,368,901	+				+2.1
5,368,921	+				+0.2
5,368,921	+				+1.3
5,368,922	-				+0.3
5,369,006	+				+0.8
5,369,007	-				+0.5
5,369,007	-				-1.7
5,369,007	-				-0.3
5,369,010	+				+1.6
5,369,010	+				-0.5
5,369,011	-				+0.6
5,369,011	-				-0.2
5,369,011	-				+0.0
5,369,011	-				-0.4
5,369,011	-				-1.7
5,369,011	-				-3.0
5,369,011	-				+0.3
5,369,100	+		PFR28_04713	0.34	+0.4
5,369,101	-		PFR28_04713	0.34	+0.1
5,369,173	+		PFR28_04713	0.56	+0.0
5,369,174	-		PFR28_04713	0.56	+1.5
5,369,224	+		PFR28_04713	0.72	+0.4
5,369,224	+		PFR28_04713	0.72	-0.1
5,369,291	-				+0.0
5,369,291	-				+0.0
5,369,525	-		PFR28_04714	0.24	-0.7
5,369,525	-		PFR28_04714	0.24	+0.5
5,369,525	-		PFR28_04714	0.24	-0.6
5,369,525	-		PFR28_04714	0.24	+0.6
5,369,527	+		PFR28_04714	0.24	+0.2
5,369,527	+		PFR28_04714	0.24	-1.0
5,369,527	+		PFR28_04714	0.24	+0.2
5,369,527	+		PFR28_04714	0.24	+1.8
5,369,527	+		PFR28_04714	0.24	+0.3
5,369,528	-		PFR28_04714	0.24	-0.6
5,369,528	-		PFR28_04714	0.24	-1.5
5,369,528	-		PFR28_04714	0.24	+0.2
5,369,528	-		PFR28_04714	0.24	-2.1
5,369,528	-		PFR28_04714	0.24	-1.3
5,369,622	-		PFR28_04714	0.35	-0.0
5,369,622	-		PFR28_04714	0.35	+0.7
5,369,622	-		PFR28_04714	0.35	-1.3
5,369,687	-		PFR28_04714	0.42	-2.3
5,369,731	+		PFR28_04714	0.47	-0.7
5,369,731	+		PFR28_04714	0.47	-2.3
5,369,731	+		PFR28_04714	0.47	-0.4
5,369,731	+		PFR28_04714	0.47	+0.7
5,369,731	+		PFR28_04714	0.47	-2.4
5,369,731	+		PFR28_04714	0.47	+1.6
5,369,731	+		PFR28_04714	0.47	-1.2
5,369,731	+		PFR28_04714	0.47	-1.2
5,369,731	+		PFR28_04714	0.47	-1.3
5,369,732	-		PFR28_04714	0.47	+1.6
5,369,732	-		PFR28_04714	0.47	+1.2
5,369,732	-		PFR28_04714	0.47	+0.2
5,369,732	-		PFR28_04714	0.47	+0.7
5,369,732	-		PFR28_04714	0.47	-2.1