Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04071 and PFR28_04072 are separated by 148 nucleotides PFR28_04072 and PFR28_04073 overlap by 10 nucleotides PFR28_04073 and PFR28_04074 are separated by 74 nucleotides PFR28_04074 and PFR28_04075 are separated by 8 nucleotides
PFR28_04071: PFR28_04071 - Multifunctional CCA protein, at 4,649,902 to 4,651,128
_04071
PFR28_04072: PFR28_04072 - Bifunctional folate synthesis protein, at 4,651,277 to 4,651,795
_04072
PFR28_04073: PFR28_04073 - Dihydroneopterin aldolase, at 4,651,786 to 4,652,139
_04073
PFR28_04074: PFR28_04074 - Glycerol-3-phosphate acyltransferase, at 4,652,214 to 4,652,783
_04074
PFR28_04075: PFR28_04075 - tRNA N6-adenosine threonylcarbamoyltransferase, at 4,652,792 to 4,653,817
_04075
Position (kb) 4651
4652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4650.662 kb on + strand, within PFR28_04071 at 4651.108 kb on + strand at 4651.109 kb on - strand at 4651.109 kb on - strand at 4651.109 kb on - strand at 4651.109 kb on - strand at 4651.109 kb on - strand at 4651.163 kb on + strand at 4651.164 kb on - strand at 4651.164 kb on - strand at 4651.164 kb on - strand at 4651.172 kb on + strand at 4651.172 kb on + strand at 4651.173 kb on - strand at 4651.297 kb on + strand at 4651.298 kb on - strand at 4651.298 kb on - strand at 4651.338 kb on - strand, within PFR28_04072 at 4651.397 kb on + strand, within PFR28_04072 at 4651.398 kb on - strand, within PFR28_04072 at 4651.398 kb on - strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.503 kb on + strand, within PFR28_04072 at 4651.504 kb on - strand, within PFR28_04072 at 4651.504 kb on - strand, within PFR28_04072 at 4651.504 kb on - strand, within PFR28_04072 at 4651.504 kb on - strand, within PFR28_04072 at 4651.756 kb on + strand at 4651.757 kb on - strand at 4652.206 kb on + strand at 4652.206 kb on + strand at 4652.206 kb on + strand at 4652.206 kb on + strand at 4652.206 kb on + strand at 4652.207 kb on - strand at 4652.207 kb on - strand at 4652.207 kb on - strand at 4652.207 kb on - strand at 4652.210 kb on + strand at 4652.210 kb on + strand at 4652.210 kb on + strand at 4652.210 kb on + strand at 4652.210 kb on + strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.211 kb on - strand at 4652.241 kb on + strand at 4652.242 kb on - strand at 4652.242 kb on - strand at 4652.500 kb on - strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.607 kb on + strand, within PFR28_04074 at 4652.608 kb on - strand, within PFR28_04074 at 4652.746 kb on + strand at 4652.746 kb on + strand at 4652.746 kb on + strand at 4652.747 kb on - strand at 4652.747 kb on - strand at 4652.781 kb on + strand at 4652.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 4,650,662 + PFR28_04071 0.62 -0.6 4,651,108 + +1.1 4,651,109 - +1.7 4,651,109 - -0.4 4,651,109 - -0.1 4,651,109 - +0.5 4,651,109 - -0.4 4,651,163 + +0.2 4,651,164 - +0.6 4,651,164 - -0.4 4,651,164 - -1.4 4,651,172 + -0.8 4,651,172 + +0.2 4,651,173 - +0.6 4,651,297 + -0.8 4,651,298 - -1.0 4,651,298 - +0.0 4,651,338 - PFR28_04072 0.12 -1.8 4,651,397 + PFR28_04072 0.23 -1.0 4,651,398 - PFR28_04072 0.23 -2.7 4,651,398 - PFR28_04072 0.23 -0.8 4,651,503 + PFR28_04072 0.44 -0.8 4,651,503 + PFR28_04072 0.44 -0.6 4,651,503 + PFR28_04072 0.44 -2.7 4,651,503 + PFR28_04072 0.44 -0.9 4,651,503 + PFR28_04072 0.44 -1.9 4,651,503 + PFR28_04072 0.44 -1.9 4,651,503 + PFR28_04072 0.44 +2.8 4,651,504 - PFR28_04072 0.44 -2.4 4,651,504 - PFR28_04072 0.44 +0.4 4,651,504 - PFR28_04072 0.44 -0.8 4,651,504 - PFR28_04072 0.44 -2.0 4,651,756 + -1.8 4,651,757 - -1.8 4,652,206 + +0.7 4,652,206 + -2.0 4,652,206 + +0.3 4,652,206 + +0.7 4,652,206 + -0.4 4,652,207 - -1.0 4,652,207 - +0.3 4,652,207 - -3.3 4,652,207 - -0.1 4,652,210 + +0.5 4,652,210 + +0.7 4,652,210 + +2.1 4,652,210 + +1.0 4,652,210 + -0.7 4,652,211 - -0.3 4,652,211 - +1.3 4,652,211 - +0.3 4,652,211 - +0.1 4,652,211 - -0.7 4,652,211 - -0.1 4,652,211 - -0.2 4,652,241 + -3.4 4,652,242 - +0.7 4,652,242 - -2.7 4,652,500 - PFR28_04074 0.50 +0.4 4,652,607 + PFR28_04074 0.69 +0.8 4,652,607 + PFR28_04074 0.69 -1.2 4,652,607 + PFR28_04074 0.69 +0.2 4,652,607 + PFR28_04074 0.69 +1.0 4,652,607 + PFR28_04074 0.69 -2.4 4,652,607 + PFR28_04074 0.69 +0.2 4,652,608 - PFR28_04074 0.69 -0.4 4,652,746 + +1.0 4,652,746 + -0.0 4,652,746 + +0.0 4,652,747 - +0.5 4,652,747 - -0.6 4,652,781 + -0.4 4,652,782 - -0.8
Or see this region's nucleotide sequence