Strain Fitness in Pseudomonas sp. RS175 around PFR28_04071

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04070 and PFR28_04071 are separated by 64 nucleotidesPFR28_04071 and PFR28_04072 are separated by 148 nucleotidesPFR28_04072 and PFR28_04073 overlap by 10 nucleotides PFR28_04070: PFR28_04070 - hypothetical protein, at 4,648,272 to 4,649,837 _04070 PFR28_04071: PFR28_04071 - Multifunctional CCA protein, at 4,649,902 to 4,651,128 _04071 PFR28_04072: PFR28_04072 - Bifunctional folate synthesis protein, at 4,651,277 to 4,651,795 _04072 PFR28_04073: PFR28_04073 - Dihydroneopterin aldolase, at 4,651,786 to 4,652,139 _04073 Position (kb) 4649 4650 4651 4652Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4648.944 kb on + strand, within PFR28_04070at 4648.944 kb on + strand, within PFR28_04070at 4648.944 kb on + strand, within PFR28_04070at 4648.944 kb on + strand, within PFR28_04070at 4648.944 kb on + strand, within PFR28_04070at 4648.945 kb on - strand, within PFR28_04070at 4648.945 kb on - strand, within PFR28_04070at 4648.945 kb on - strand, within PFR28_04070at 4648.945 kb on - strand, within PFR28_04070at 4648.945 kb on - strand, within PFR28_04070at 4648.998 kb on + strand, within PFR28_04070at 4648.998 kb on + strand, within PFR28_04070at 4648.998 kb on + strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4648.999 kb on - strand, within PFR28_04070at 4649.076 kb on + strand, within PFR28_04070at 4649.076 kb on + strand, within PFR28_04070at 4649.077 kb on - strand, within PFR28_04070at 4649.077 kb on - strand, within PFR28_04070at 4649.077 kb on - strand, within PFR28_04070at 4649.136 kb on + strand, within PFR28_04070at 4649.137 kb on - strand, within PFR28_04070at 4649.137 kb on - strand, within PFR28_04070at 4649.157 kb on + strand, within PFR28_04070at 4649.157 kb on + strand, within PFR28_04070at 4649.158 kb on - strand, within PFR28_04070at 4649.210 kb on + strand, within PFR28_04070at 4649.211 kb on - strand, within PFR28_04070at 4649.247 kb on + strand, within PFR28_04070at 4649.250 kb on + strand, within PFR28_04070at 4649.250 kb on + strand, within PFR28_04070at 4649.250 kb on + strand, within PFR28_04070at 4649.251 kb on - strand, within PFR28_04070at 4649.268 kb on + strand, within PFR28_04070at 4649.268 kb on + strand, within PFR28_04070at 4649.269 kb on - strand, within PFR28_04070at 4649.289 kb on + strand, within PFR28_04070at 4649.289 kb on + strand, within PFR28_04070at 4649.290 kb on - strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.427 kb on + strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.428 kb on - strand, within PFR28_04070at 4649.562 kb on + strand, within PFR28_04070at 4649.562 kb on + strand, within PFR28_04070at 4649.562 kb on + strand, within PFR28_04070at 4649.562 kb on + strand, within PFR28_04070at 4649.563 kb on - strand, within PFR28_04070at 4649.563 kb on - strand, within PFR28_04070at 4649.563 kb on - strand, within PFR28_04070at 4649.563 kb on - strand, within PFR28_04070at 4649.563 kb on - strand, within PFR28_04070at 4649.598 kb on + strand, within PFR28_04070at 4649.598 kb on + strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.599 kb on - strand, within PFR28_04070at 4649.657 kb on + strand, within PFR28_04070at 4649.658 kb on - strand, within PFR28_04070at 4649.708 kb on - strandat 4649.752 kb on + strandat 4649.770 kb on + strandat 4649.770 kb on + strandat 4649.771 kb on - strandat 4649.771 kb on - strandat 4649.771 kb on - strandat 4649.771 kb on - strandat 4649.771 kb on - strandat 4649.771 kb on - strandat 4649.803 kb on - strandat 4649.902 kb on - strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4649.911 kb on + strandat 4650.662 kb on + strand, within PFR28_04071at 4651.108 kb on + strandat 4651.109 kb on - strandat 4651.109 kb on - strandat 4651.109 kb on - strandat 4651.109 kb on - strandat 4651.109 kb on - strandat 4651.163 kb on + strandat 4651.164 kb on - strandat 4651.164 kb on - strandat 4651.164 kb on - strandat 4651.172 kb on + strandat 4651.172 kb on + strandat 4651.173 kb on - strandat 4651.297 kb on + strandat 4651.298 kb on - strandat 4651.298 kb on - strandat 4651.338 kb on - strand, within PFR28_04072at 4651.397 kb on + strand, within PFR28_04072at 4651.398 kb on - strand, within PFR28_04072at 4651.398 kb on - strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.503 kb on + strand, within PFR28_04072at 4651.504 kb on - strand, within PFR28_04072at 4651.504 kb on - strand, within PFR28_04072at 4651.504 kb on - strand, within PFR28_04072at 4651.504 kb on - strand, within PFR28_04072at 4651.756 kb on + strandat 4651.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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4,648,944 + PFR28_04070 0.43 -1.4
4,648,944 + PFR28_04070 0.43 +1.7
4,648,944 + PFR28_04070 0.43 -0.4
4,648,944 + PFR28_04070 0.43 +0.1
4,648,944 + PFR28_04070 0.43 +1.1
4,648,945 - PFR28_04070 0.43 -0.4
4,648,945 - PFR28_04070 0.43 -0.4
4,648,945 - PFR28_04070 0.43 +0.4
4,648,945 - PFR28_04070 0.43 +0.7
4,648,945 - PFR28_04070 0.43 -0.3
4,648,998 + PFR28_04070 0.46 -2.8
4,648,998 + PFR28_04070 0.46 +1.0
4,648,998 + PFR28_04070 0.46 +0.1
4,648,999 - PFR28_04070 0.46 -0.2
4,648,999 - PFR28_04070 0.46 -0.7
4,648,999 - PFR28_04070 0.46 -0.0
4,648,999 - PFR28_04070 0.46 -0.5
4,648,999 - PFR28_04070 0.46 -2.3
4,648,999 - PFR28_04070 0.46 -0.3
4,649,076 + PFR28_04070 0.51 +0.4
4,649,076 + PFR28_04070 0.51 -0.9
4,649,077 - PFR28_04070 0.51 +1.6
4,649,077 - PFR28_04070 0.51 +0.5
4,649,077 - PFR28_04070 0.51 -0.6
4,649,136 + PFR28_04070 0.55 -1.3
4,649,137 - PFR28_04070 0.55 +1.1
4,649,137 - PFR28_04070 0.55 -0.8
4,649,157 + PFR28_04070 0.57 -0.7
4,649,157 + PFR28_04070 0.57 +0.1
4,649,158 - PFR28_04070 0.57 +0.5
4,649,210 + PFR28_04070 0.60 -2.3
4,649,211 - PFR28_04070 0.60 +0.2
4,649,247 + PFR28_04070 0.62 -0.3
4,649,250 + PFR28_04070 0.62 -0.1
4,649,250 + PFR28_04070 0.62 +0.8
4,649,250 + PFR28_04070 0.62 +0.9
4,649,251 - PFR28_04070 0.63 -1.2
4,649,268 + PFR28_04070 0.64 +1.1
4,649,268 + PFR28_04070 0.64 +1.7
4,649,269 - PFR28_04070 0.64 +0.0
4,649,289 + PFR28_04070 0.65 +0.3
4,649,289 + PFR28_04070 0.65 +0.5
4,649,290 - PFR28_04070 0.65 -0.1
4,649,427 + PFR28_04070 0.74 -0.5
4,649,427 + PFR28_04070 0.74 +0.2
4,649,427 + PFR28_04070 0.74 +0.8
4,649,427 + PFR28_04070 0.74 +0.5
4,649,427 + PFR28_04070 0.74 -0.0
4,649,427 + PFR28_04070 0.74 +0.2
4,649,427 + PFR28_04070 0.74 +0.6
4,649,428 - PFR28_04070 0.74 -1.2
4,649,428 - PFR28_04070 0.74 +1.1
4,649,428 - PFR28_04070 0.74 -1.5
4,649,428 - PFR28_04070 0.74 -1.7
4,649,428 - PFR28_04070 0.74 +0.3
4,649,428 - PFR28_04070 0.74 -0.6
4,649,428 - PFR28_04070 0.74 -2.5
4,649,562 + PFR28_04070 0.82 -1.3
4,649,562 + PFR28_04070 0.82 -0.1
4,649,562 + PFR28_04070 0.82 +0.6
4,649,562 + PFR28_04070 0.82 -0.2
4,649,563 - PFR28_04070 0.82 -0.5
4,649,563 - PFR28_04070 0.82 +1.1
4,649,563 - PFR28_04070 0.82 -1.8
4,649,563 - PFR28_04070 0.82 +1.1
4,649,563 - PFR28_04070 0.82 -0.0
4,649,598 + PFR28_04070 0.85 +0.6
4,649,598 + PFR28_04070 0.85 -0.2
4,649,599 - PFR28_04070 0.85 +0.4
4,649,599 - PFR28_04070 0.85 +0.7
4,649,599 - PFR28_04070 0.85 -0.0
4,649,599 - PFR28_04070 0.85 -0.4
4,649,599 - PFR28_04070 0.85 -1.6
4,649,599 - PFR28_04070 0.85 -0.2
4,649,599 - PFR28_04070 0.85 +0.6
4,649,657 + PFR28_04070 0.88 -0.8
4,649,658 - PFR28_04070 0.89 +0.0
4,649,708 - -1.1
4,649,752 + +1.3
4,649,770 + +1.0
4,649,770 + -2.1
4,649,771 - +0.1
4,649,771 - -0.5
4,649,771 - +0.6
4,649,771 - +0.4
4,649,771 - -1.0
4,649,771 - -1.1
4,649,803 - +0.3
4,649,902 - -0.2
4,649,911 + -0.4
4,649,911 + +0.1
4,649,911 + -0.6
4,649,911 + -1.1
4,649,911 + +1.7
4,649,911 + +0.6
4,649,911 + +0.8
4,649,911 + -0.6
4,650,662 + PFR28_04071 0.62 -0.6
4,651,108 + +1.1
4,651,109 - +1.7
4,651,109 - -0.4
4,651,109 - -0.1
4,651,109 - +0.5
4,651,109 - -0.4
4,651,163 + +0.2
4,651,164 - +0.6
4,651,164 - -0.4
4,651,164 - -1.4
4,651,172 + -0.8
4,651,172 + +0.2
4,651,173 - +0.6
4,651,297 + -0.8
4,651,298 - -1.0
4,651,298 - +0.0
4,651,338 - PFR28_04072 0.12 -1.8
4,651,397 + PFR28_04072 0.23 -1.0
4,651,398 - PFR28_04072 0.23 -2.7
4,651,398 - PFR28_04072 0.23 -0.8
4,651,503 + PFR28_04072 0.44 -0.8
4,651,503 + PFR28_04072 0.44 -0.6
4,651,503 + PFR28_04072 0.44 -2.7
4,651,503 + PFR28_04072 0.44 -0.9
4,651,503 + PFR28_04072 0.44 -1.9
4,651,503 + PFR28_04072 0.44 -1.9
4,651,503 + PFR28_04072 0.44 +2.8
4,651,504 - PFR28_04072 0.44 -2.4
4,651,504 - PFR28_04072 0.44 +0.4
4,651,504 - PFR28_04072 0.44 -0.8
4,651,504 - PFR28_04072 0.44 -2.0
4,651,756 + -1.8
4,651,757 - -1.8

Or see this region's nucleotide sequence