Strain Fitness in Pseudomonas sp. RS175 around PFR28_04064

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04062 and PFR28_04063 overlap by 4 nucleotidesPFR28_04063 and PFR28_04064 overlap by 4 nucleotidesPFR28_04064 and PFR28_04065 are separated by 258 nucleotidesPFR28_04065 and PFR28_04066 overlap by 1 nucleotides PFR28_04062: PFR28_04062 - Chaperone SurA, at 4,639,668 to 4,640,990 _04062 PFR28_04063: PFR28_04063 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 4,640,987 to 4,641,976 _04063 PFR28_04064: PFR28_04064 - Ribosomal RNA small subunit methyltransferase A, at 4,641,973 to 4,642,791 _04064 PFR28_04065: PFR28_04065 - Protein ApaG, at 4,643,050 to 4,643,430 _04065 PFR28_04066: PFR28_04066 - 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical' transl_table=11, at 4,643,430 to 4,644,305 _04066 Position (kb) 4641 4642 4643Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4641.972 kb on + strandat 4641.973 kb on - strandat 4641.973 kb on - strandat 4641.973 kb on - strandat 4641.985 kb on + strandat 4641.985 kb on + strandat 4641.986 kb on - strandat 4641.986 kb on - strandat 4642.309 kb on + strand, within PFR28_04064at 4642.309 kb on + strand, within PFR28_04064at 4642.309 kb on + strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.310 kb on - strand, within PFR28_04064at 4642.459 kb on + strand, within PFR28_04064at 4642.655 kb on + strand, within PFR28_04064at 4642.655 kb on + strand, within PFR28_04064at 4642.656 kb on - strand, within PFR28_04064at 4642.656 kb on - strand, within PFR28_04064at 4642.829 kb on + strandat 4642.830 kb on - strandat 4642.840 kb on - strandat 4642.849 kb on - strandat 4642.849 kb on - strandat 4643.144 kb on - strand, within PFR28_04065at 4643.151 kb on + strand, within PFR28_04065at 4643.151 kb on + strand, within PFR28_04065at 4643.151 kb on + strand, within PFR28_04065at 4643.152 kb on - strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.296 kb on + strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.297 kb on - strand, within PFR28_04065at 4643.298 kb on + strand, within PFR28_04065at 4643.298 kb on + strand, within PFR28_04065at 4643.298 kb on + strand, within PFR28_04065at 4643.299 kb on - strand, within PFR28_04065at 4643.299 kb on - strand, within PFR28_04065at 4643.347 kb on + strand, within PFR28_04065at 4643.348 kb on - strand, within PFR28_04065at 4643.348 kb on - strand, within PFR28_04065at 4643.348 kb on - strand, within PFR28_04065at 4643.435 kb on + strandat 4643.439 kb on + strandat 4643.439 kb on + strandat 4643.439 kb on + strandat 4643.439 kb on + strandat 4643.439 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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4,641,972 + +1.4
4,641,973 - -2.6
4,641,973 - -3.1
4,641,973 - -1.6
4,641,985 + -0.5
4,641,985 + -0.0
4,641,986 - -1.3
4,641,986 - +0.7
4,642,309 + PFR28_04064 0.41 -0.4
4,642,309 + PFR28_04064 0.41 -2.4
4,642,309 + PFR28_04064 0.41 -0.2
4,642,310 - PFR28_04064 0.41 -1.6
4,642,310 - PFR28_04064 0.41 +0.5
4,642,310 - PFR28_04064 0.41 -1.3
4,642,310 - PFR28_04064 0.41 -1.4
4,642,310 - PFR28_04064 0.41 -2.8
4,642,310 - PFR28_04064 0.41 -2.4
4,642,459 + PFR28_04064 0.59 -1.8
4,642,655 + PFR28_04064 0.83 -0.7
4,642,655 + PFR28_04064 0.83 +1.8
4,642,656 - PFR28_04064 0.83 -0.0
4,642,656 - PFR28_04064 0.83 +0.8
4,642,829 + +0.5
4,642,830 - +0.0
4,642,840 - +0.6
4,642,849 - +0.6
4,642,849 - +0.4
4,643,144 - PFR28_04065 0.25 +0.8
4,643,151 + PFR28_04065 0.27 -0.7
4,643,151 + PFR28_04065 0.27 +0.7
4,643,151 + PFR28_04065 0.27 +0.4
4,643,152 - PFR28_04065 0.27 -1.3
4,643,296 + PFR28_04065 0.65 +0.7
4,643,296 + PFR28_04065 0.65 -0.7
4,643,296 + PFR28_04065 0.65 -0.0
4,643,296 + PFR28_04065 0.65 +0.5
4,643,296 + PFR28_04065 0.65 -0.4
4,643,296 + PFR28_04065 0.65 +0.8
4,643,296 + PFR28_04065 0.65 -0.2
4,643,296 + PFR28_04065 0.65 -0.4
4,643,296 + PFR28_04065 0.65 -2.3
4,643,296 + PFR28_04065 0.65 +0.3
4,643,296 + PFR28_04065 0.65 -1.1
4,643,296 + PFR28_04065 0.65 +0.6
4,643,296 + PFR28_04065 0.65 +1.6
4,643,296 + PFR28_04065 0.65 -0.8
4,643,296 + PFR28_04065 0.65 -0.6
4,643,296 + PFR28_04065 0.65 +1.8
4,643,297 - PFR28_04065 0.65 +0.7
4,643,297 - PFR28_04065 0.65 +0.1
4,643,297 - PFR28_04065 0.65 -0.5
4,643,297 - PFR28_04065 0.65 -1.9
4,643,297 - PFR28_04065 0.65 +0.1
4,643,297 - PFR28_04065 0.65 -0.8
4,643,297 - PFR28_04065 0.65 +1.1
4,643,297 - PFR28_04065 0.65 +0.3
4,643,297 - PFR28_04065 0.65 -1.9
4,643,297 - PFR28_04065 0.65 +1.6
4,643,297 - PFR28_04065 0.65 +1.6
4,643,298 + PFR28_04065 0.65 -0.2
4,643,298 + PFR28_04065 0.65 -0.2
4,643,298 + PFR28_04065 0.65 +0.5
4,643,299 - PFR28_04065 0.65 +0.8
4,643,299 - PFR28_04065 0.65 +0.6
4,643,347 + PFR28_04065 0.78 +1.1
4,643,348 - PFR28_04065 0.78 -2.4
4,643,348 - PFR28_04065 0.78 +1.4
4,643,348 - PFR28_04065 0.78 -1.0
4,643,435 + -0.5
4,643,439 + +1.6
4,643,439 + -1.3
4,643,439 + -0.8
4,643,439 + -1.8
4,643,439 + -0.1

Or see this region's nucleotide sequence