Strain Fitness in Pseudomonas sp. RS175 around PFR28_03698

Experiment: L-Malic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C) 10 mM
4,263,464	-		PFR28_03697	0.16	-3.8
4,263,464	-		PFR28_03697	0.16	-1.3
4,263,479	+		PFR28_03697	0.17	-2.8
4,263,479	+		PFR28_03697	0.17	-4.3
4,263,479	+		PFR28_03697	0.17	-2.0
4,263,479	+		PFR28_03697	0.17	-1.0
4,263,479	+		PFR28_03697	0.17	-3.6
4,263,479	+		PFR28_03697	0.17	-3.9
4,263,479	+		PFR28_03697	0.17	-3.1
4,263,480	-		PFR28_03697	0.17	-4.7
4,263,544	+		PFR28_03697	0.24	-0.8
4,263,545	-		PFR28_03697	0.24	-1.3
4,263,545	-		PFR28_03697	0.24	-1.8
4,263,553	+		PFR28_03697	0.25	-1.5
4,263,577	+		PFR28_03697	0.27	-4.0
4,263,577	+		PFR28_03697	0.27	-4.0
4,263,577	+		PFR28_03697	0.27	-2.0
4,263,578	-		PFR28_03697	0.27	-2.0
4,263,578	-		PFR28_03697	0.27	-3.1
4,263,578	-		PFR28_03697	0.27	-3.5
4,263,578	-		PFR28_03697	0.27	-3.4
4,263,578	-		PFR28_03697	0.27	-2.1
4,263,604	+		PFR28_03697	0.30	-4.1
4,263,604	+		PFR28_03697	0.30	-3.0
4,263,604	+		PFR28_03697	0.30	-3.9
4,263,604	+		PFR28_03697	0.30	-3.5
4,263,604	+		PFR28_03697	0.30	-1.7
4,263,604	+		PFR28_03697	0.30	-2.5
4,263,604	+		PFR28_03697	0.30	-2.6
4,263,604	+		PFR28_03697	0.30	-3.3
4,263,604	+		PFR28_03697	0.30	-4.4
4,263,604	+		PFR28_03697	0.30	-2.1
4,263,604	+		PFR28_03697	0.30	-4.0
4,263,605	-		PFR28_03697	0.30	-3.4
4,263,605	-		PFR28_03697	0.30	+0.8
4,263,605	-		PFR28_03697	0.30	-1.8
4,263,605	-		PFR28_03697	0.30	-4.7
4,263,605	-		PFR28_03697	0.30	-3.5
4,263,605	-		PFR28_03697	0.30	-2.9
4,263,649	+		PFR28_03697	0.34	-1.8
4,263,650	-		PFR28_03697	0.34	-4.6
4,263,667	+		PFR28_03697	0.36	-1.5
4,263,668	-		PFR28_03697	0.36	-4.0
4,263,717	-		PFR28_03697	0.41	-4.6
4,263,820	+		PFR28_03697	0.51	-4.5
4,263,820	+		PFR28_03697	0.51	-1.4
4,263,820	+		PFR28_03697	0.51	-4.0
4,263,821	-		PFR28_03697	0.51	-3.6
4,263,821	-		PFR28_03697	0.51	-4.3
4,263,862	+		PFR28_03697	0.55	-4.2
4,263,862	+		PFR28_03697	0.55	-5.0
4,263,862	+		PFR28_03697	0.55	-2.2
4,263,863	-		PFR28_03697	0.55	-5.3
4,263,863	-		PFR28_03697	0.55	-3.9
4,263,863	-		PFR28_03697	0.55	-4.4
4,263,866	+		PFR28_03697	0.55	-4.2
4,263,866	+		PFR28_03697	0.55	-5.2
4,263,866	+		PFR28_03697	0.55	-4.1
4,263,866	+		PFR28_03697	0.55	-2.1
4,263,982	+		PFR28_03697	0.67	-4.0
4,263,982	+		PFR28_03697	0.67	-2.9
4,263,983	-		PFR28_03697	0.67	-3.0
4,263,983	-		PFR28_03697	0.67	-2.6
4,263,983	-		PFR28_03697	0.67	-4.7
4,263,983	-		PFR28_03697	0.67	-0.8
4,264,054	+		PFR28_03697	0.74	-3.7
4,264,178	+		PFR28_03697	0.86	-2.8
4,264,178	+		PFR28_03697	0.86	-0.5
4,264,178	+		PFR28_03697	0.86	-4.2
4,264,307	-				-1.1
4,264,330	+				-3.9
4,264,330	+				-4.4
4,264,331	-				-0.1
4,264,331	-				+1.2
4,264,331	-				-1.6
4,264,331	-				-0.7
4,264,331	-				-1.7
4,264,332	+				-1.8
4,264,356	+				-3.0
4,264,366	+				-1.8
4,264,366	+				-3.5
4,264,367	-				-1.8
4,264,367	-				+0.5
4,264,377	+				-0.1
4,264,377	+				-1.2
4,264,377	+				-2.9
4,264,378	-				-0.2
4,264,378	-				-0.4
4,264,378	-				+1.3
4,264,416	+		PFR28_03698	0.10	-4.0
4,264,497	-		PFR28_03698	0.27	-3.3
4,264,499	-		PFR28_03698	0.27	-1.7
4,264,499	-		PFR28_03698	0.27	-4.8
4,264,499	-		PFR28_03698	0.27	-3.2
4,264,499	-		PFR28_03698	0.27	-1.7
4,264,534	+		PFR28_03698	0.34	-1.7
4,264,534	+		PFR28_03698	0.34	-1.8
4,264,534	+		PFR28_03698	0.34	-2.8
4,264,534	+		PFR28_03698	0.34	-3.2
4,264,535	-		PFR28_03698	0.35	-1.0
4,264,535	-		PFR28_03698	0.35	-3.4
4,264,535	-		PFR28_03698	0.35	-4.0
4,264,535	-		PFR28_03698	0.35	+0.1
4,264,538	+		PFR28_03698	0.35	-1.7
4,264,539	-		PFR28_03698	0.35	-5.3
4,264,539	-		PFR28_03698	0.35	-3.9
4,264,746	-		PFR28_03698	0.77	-3.3
4,264,774	+		PFR28_03698	0.83	-1.1
4,264,774	+		PFR28_03698	0.83	-0.1
4,264,774	+		PFR28_03698	0.83	-1.8
4,264,774	+		PFR28_03698	0.83	-2.4
4,264,774	+		PFR28_03698	0.83	-1.7
4,264,774	+		PFR28_03698	0.83	-0.8
4,264,775	-		PFR28_03698	0.83	-1.8
4,264,775	-		PFR28_03698	0.83	-1.8
4,264,775	-		PFR28_03698	0.83	-1.3
4,264,797	+		PFR28_03698	0.88	-1.3
4,264,797	+		PFR28_03698	0.88	-3.2
4,264,797	+		PFR28_03698	0.88	-2.1
4,264,797	+		PFR28_03698	0.88	-1.7
4,264,797	+		PFR28_03698	0.88	-3.4
4,264,797	+		PFR28_03698	0.88	+0.3
4,264,798	-		PFR28_03698	0.88	-2.8
4,264,798	-		PFR28_03698	0.88	-1.3
4,264,798	-		PFR28_03698	0.88	-1.3
4,264,798	-		PFR28_03698	0.88	-4.7
4,264,800	+		PFR28_03698	0.88	-2.5
4,264,800	+		PFR28_03698	0.88	-1.7
4,264,800	+		PFR28_03698	0.88	-1.5
4,264,800	+		PFR28_03698	0.88	-2.3
4,264,800	+		PFR28_03698	0.88	-2.0
4,264,801	-		PFR28_03698	0.89	-1.8
4,264,801	-		PFR28_03698	0.89	-3.3
4,264,801	-		PFR28_03698	0.89	-3.5
4,264,844	+				-1.3
4,264,844	+				-2.3
4,264,844	+				-1.5
4,264,844	+				-3.5
4,264,844	+				-0.3
4,264,845	-				-3.9
4,264,845	-				-1.9
4,264,845	-				-3.9
4,264,845	-				-2.0
4,264,845	-				-2.0
4,264,845	-				-0.7
4,264,845	-				-4.4
4,264,845	-				-3.0
4,264,845	-				-2.7
4,264,847	+				-2.3
4,264,848	-				-2.5
4,264,860	+				-0.8
4,264,860	+				-2.6
4,264,860	+				-2.6
4,264,860	+				-1.8
4,264,861	-				-1.1
4,264,861	-				-0.9
4,264,861	-				-0.1
4,264,861	-				-3.0
4,264,864	+				-0.5
4,264,864	+				-1.8
4,264,865	-				-1.8
4,264,865	-				-2.6
4,264,865	-				-1.9
4,264,865	-				-0.8
4,264,865	-				-2.7
4,264,888	+				-3.9
4,264,888	+				-2.0
4,264,888	+				-3.2
4,264,888	+				-1.1
4,264,888	+				-1.5
4,264,889	-				-2.0
4,264,889	-				-3.7
4,264,889	-				-1.5
4,264,961	+				-1.8
4,265,014	+				-2.0
4,265,046	+		PFR28_03699	0.11	-1.6
4,265,046	+		PFR28_03699	0.11	-1.1
4,265,046	+		PFR28_03699	0.11	-1.3
4,265,046	+		PFR28_03699	0.11	-1.5
4,265,047	-		PFR28_03699	0.11	+0.5
4,265,047	-		PFR28_03699	0.11	-1.7
4,265,088	+		PFR28_03699	0.13	-2.0
4,265,088	+		PFR28_03699	0.13	-3.4
4,265,088	+		PFR28_03699	0.13	-2.1
4,265,088	+		PFR28_03699	0.13	-2.8
4,265,089	-		PFR28_03699	0.13	-3.8
4,265,089	-		PFR28_03699	0.13	-3.4
4,265,113	-		PFR28_03699	0.15	-2.5
4,265,113	-		PFR28_03699	0.15	-1.8
4,265,113	-		PFR28_03699	0.15	-1.7
4,265,361	+		PFR28_03699	0.29	-2.5
4,265,361	+		PFR28_03699	0.29	-2.9
4,265,361	+		PFR28_03699	0.29	-4.0
4,265,362	-		PFR28_03699	0.29	-3.6
4,265,362	-		PFR28_03699	0.29	-1.7
4,265,362	-		PFR28_03699	0.29	-2.3
4,265,362	-		PFR28_03699	0.29	-1.7
4,265,362	-		PFR28_03699	0.29	-2.4
4,265,364	+		PFR28_03699	0.29	-1.5
4,265,364	+		PFR28_03699	0.29	-1.7
4,265,364	+		PFR28_03699	0.29	-3.7
4,265,365	-		PFR28_03699	0.29	-3.2
4,265,603	+		PFR28_03699	0.43	-1.8
4,265,793	+		PFR28_03699	0.54	-3.0
4,265,793	+		PFR28_03699	0.54	-2.6
4,265,794	-		PFR28_03699	0.54	-2.4