Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_02828 and PFR28_02829 are separated by 32 nucleotides PFR28_02829 and PFR28_02830 are separated by 65 nucleotides PFR28_02830 and PFR28_02831 are separated by 28 nucleotides PFR28_02831 and PFR28_02832 are separated by 179 nucleotides PFR28_02832 and PFR28_02833 are separated by 75 nucleotides
PFR28_02828: PFR28_02828 - tRNA-dihydrouridine(16) synthase, at 3,304,400 to 3,305,359
_02828
PFR28_02829: PFR28_02829 - hypothetical protein, at 3,305,392 to 3,305,874
_02829
PFR28_02830: PFR28_02830 - Putative aminoacrylate hydrolase RutD, at 3,305,940 to 3,306,773
_02830
PFR28_02831: PFR28_02831 - hypothetical protein, at 3,306,802 to 3,307,341
_02831
PFR28_02832: PFR28_02832 - tRNA-Glu, at 3,307,521 to 3,307,596
_02832
PFR28_02833: PFR28_02833 - tRNA-Ala, at 3,307,672 to 3,307,747
_02833
Position (kb) 3305
3306
3307 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3304.960 kb on + strand, within PFR28_02828 at 3304.960 kb on + strand, within PFR28_02828 at 3304.982 kb on + strand, within PFR28_02828 at 3304.982 kb on + strand, within PFR28_02828 at 3304.983 kb on - strand, within PFR28_02828 at 3305.465 kb on + strand, within PFR28_02829 at 3305.654 kb on + strand, within PFR28_02829 at 3305.655 kb on - strand, within PFR28_02829 at 3305.655 kb on - strand, within PFR28_02829 at 3305.669 kb on + strand, within PFR28_02829 at 3305.717 kb on + strand, within PFR28_02829 at 3305.717 kb on + strand, within PFR28_02829 at 3305.717 kb on + strand, within PFR28_02829 at 3305.718 kb on - strand, within PFR28_02829 at 3305.783 kb on + strand, within PFR28_02829 at 3305.784 kb on - strand, within PFR28_02829 at 3305.784 kb on - strand, within PFR28_02829 at 3305.784 kb on - strand, within PFR28_02829 at 3305.893 kb on + strand at 3305.894 kb on - strand at 3306.154 kb on + strand, within PFR28_02830 at 3306.154 kb on + strand, within PFR28_02830 at 3306.154 kb on + strand, within PFR28_02830 at 3306.491 kb on + strand, within PFR28_02830 at 3306.492 kb on - strand, within PFR28_02830 at 3306.492 kb on - strand, within PFR28_02830 at 3306.762 kb on + strand at 3306.963 kb on + strand, within PFR28_02831 at 3306.963 kb on + strand, within PFR28_02831 at 3306.964 kb on - strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.073 kb on + strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.074 kb on - strand, within PFR28_02831 at 3307.208 kb on + strand, within PFR28_02831 at 3307.209 kb on - strand, within PFR28_02831 at 3307.209 kb on - strand, within PFR28_02831 at 3307.306 kb on - strand at 3307.332 kb on + strand at 3307.332 kb on + strand at 3307.358 kb on + strand at 3307.420 kb on + strand at 3307.682 kb on - strand, within PFR28_02833
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 3,304,960 + PFR28_02828 0.58 +0.3 3,304,960 + PFR28_02828 0.58 +0.1 3,304,982 + PFR28_02828 0.61 +0.9 3,304,982 + PFR28_02828 0.61 -0.8 3,304,983 - PFR28_02828 0.61 +0.0 3,305,465 + PFR28_02829 0.15 -0.4 3,305,654 + PFR28_02829 0.54 +1.4 3,305,655 - PFR28_02829 0.54 -0.7 3,305,655 - PFR28_02829 0.54 -0.1 3,305,669 + PFR28_02829 0.57 +0.4 3,305,717 + PFR28_02829 0.67 -0.8 3,305,717 + PFR28_02829 0.67 +0.8 3,305,717 + PFR28_02829 0.67 +0.5 3,305,718 - PFR28_02829 0.67 -0.1 3,305,783 + PFR28_02829 0.81 -2.3 3,305,784 - PFR28_02829 0.81 +0.5 3,305,784 - PFR28_02829 0.81 +0.5 3,305,784 - PFR28_02829 0.81 +0.4 3,305,893 + -1.5 3,305,894 - +1.4 3,306,154 + PFR28_02830 0.26 -1.5 3,306,154 + PFR28_02830 0.26 +0.0 3,306,154 + PFR28_02830 0.26 -0.3 3,306,491 + PFR28_02830 0.66 +0.1 3,306,492 - PFR28_02830 0.66 -3.0 3,306,492 - PFR28_02830 0.66 -1.7 3,306,762 + +0.3 3,306,963 + PFR28_02831 0.30 +0.8 3,306,963 + PFR28_02831 0.30 +0.4 3,306,964 - PFR28_02831 0.30 +0.3 3,307,073 + PFR28_02831 0.50 -0.6 3,307,073 + PFR28_02831 0.50 +0.6 3,307,073 + PFR28_02831 0.50 -1.2 3,307,074 - PFR28_02831 0.50 -0.2 3,307,074 - PFR28_02831 0.50 +0.4 3,307,074 - PFR28_02831 0.50 -0.0 3,307,074 - PFR28_02831 0.50 -0.8 3,307,074 - PFR28_02831 0.50 -0.5 3,307,208 + PFR28_02831 0.75 -0.6 3,307,209 - PFR28_02831 0.75 +0.6 3,307,209 - PFR28_02831 0.75 -0.6 3,307,306 - -0.6 3,307,332 + +0.9 3,307,332 + -0.8 3,307,358 + -0.4 3,307,420 + -0.9 3,307,682 - PFR28_02833 0.13 +1.7
Or see this region's nucleotide sequence