Strain Fitness in Pseudomonas sp. RS175 around PFR28_02608

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02606 and PFR28_02607 are separated by 182 nucleotidesPFR28_02607 and PFR28_02608 are separated by 63 nucleotidesPFR28_02608 and PFR28_02609 are separated by 402 nucleotides PFR28_02606: PFR28_02606 - Replication-associated recombination protein A, at 3,080,082 to 3,081,407 _02606 PFR28_02607: PFR28_02607 - Outer-membrane lipoprotein carrier protein, at 3,081,590 to 3,082,213 _02607 PFR28_02608: PFR28_02608 - DNA translocase FtsK, at 3,082,277 to 3,084,601 _02608 PFR28_02609: PFR28_02609 - Glucosaminate ammonia-lyase, at 3,085,004 to 3,085,963 _02609 Position (kb) 3082 3083 3084 3085Strain fitness (log2 ratio) -2 -1 0 1 2at 3081.334 kb on + strandat 3081.334 kb on + strandat 3081.334 kb on + strandat 3081.334 kb on + strandat 3081.335 kb on - strandat 3081.412 kb on - strandat 3081.412 kb on - strandat 3081.415 kb on + strandat 3081.415 kb on + strandat 3081.416 kb on - strandat 3081.450 kb on + strandat 3081.450 kb on + strandat 3081.450 kb on + strandat 3081.450 kb on + strandat 3081.554 kb on - strandat 3081.591 kb on + strandat 3081.591 kb on + strandat 3081.591 kb on + strandat 3082.669 kb on - strand, within PFR28_02608at 3082.669 kb on - strand, within PFR28_02608at 3082.669 kb on - strand, within PFR28_02608at 3082.669 kb on - strand, within PFR28_02608at 3082.993 kb on - strand, within PFR28_02608at 3083.517 kb on - strand, within PFR28_02608at 3084.787 kb on - strandat 3084.787 kb on - strandat 3084.790 kb on - strandat 3084.796 kb on - strandat 3084.796 kb on - strandat 3084.881 kb on + strandat 3084.881 kb on + strandat 3084.889 kb on + strandat 3084.889 kb on + strandat 3084.990 kb on + strandat 3084.990 kb on + strandat 3085.058 kb on + strandat 3085.073 kb on + strandat 3085.074 kb on - strandat 3085.074 kb on - strandat 3085.256 kb on - strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.313 kb on + strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.314 kb on - strand, within PFR28_02609at 3085.315 kb on + strand, within PFR28_02609at 3085.315 kb on + strand, within PFR28_02609at 3085.316 kb on - strand, within PFR28_02609at 3085.358 kb on + strand, within PFR28_02609at 3085.358 kb on + strand, within PFR28_02609at 3085.359 kb on - strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.493 kb on + strand, within PFR28_02609at 3085.494 kb on - strand, within PFR28_02609at 3085.494 kb on - strand, within PFR28_02609at 3085.494 kb on - strand, within PFR28_02609at 3085.494 kb on - strand, within PFR28_02609at 3085.560 kb on + strand, within PFR28_02609at 3085.560 kb on + strand, within PFR28_02609at 3085.600 kb on + strand, within PFR28_02609

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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3,081,334 + +0.2
3,081,334 + +1.4
3,081,334 + -0.3
3,081,334 + +0.4
3,081,335 - -0.7
3,081,412 - -0.2
3,081,412 - -0.3
3,081,415 + +0.0
3,081,415 + +0.4
3,081,416 - -1.8
3,081,450 + +0.7
3,081,450 + +0.6
3,081,450 + -1.8
3,081,450 + -1.5
3,081,554 - -1.3
3,081,591 + +0.1
3,081,591 + +0.5
3,081,591 + +1.1
3,082,669 - PFR28_02608 0.17 -0.6
3,082,669 - PFR28_02608 0.17 -1.3
3,082,669 - PFR28_02608 0.17 -2.6
3,082,669 - PFR28_02608 0.17 -2.6
3,082,993 - PFR28_02608 0.31 +0.4
3,083,517 - PFR28_02608 0.53 -2.5
3,084,787 - -0.7
3,084,787 - -0.3
3,084,790 - +1.1
3,084,796 - -0.9
3,084,796 - +1.9
3,084,881 + -1.6
3,084,881 + +0.1
3,084,889 + -2.4
3,084,889 + -0.2
3,084,990 + +0.1
3,084,990 + +0.1
3,085,058 + -0.3
3,085,073 + -1.2
3,085,074 - -0.5
3,085,074 - -0.7
3,085,256 - PFR28_02609 0.26 -0.9
3,085,313 + PFR28_02609 0.32 -0.3
3,085,313 + PFR28_02609 0.32 -0.7
3,085,313 + PFR28_02609 0.32 -0.7
3,085,313 + PFR28_02609 0.32 +0.4
3,085,313 + PFR28_02609 0.32 -1.2
3,085,313 + PFR28_02609 0.32 -0.7
3,085,313 + PFR28_02609 0.32 -0.4
3,085,313 + PFR28_02609 0.32 -0.9
3,085,313 + PFR28_02609 0.32 +0.7
3,085,313 + PFR28_02609 0.32 +0.6
3,085,313 + PFR28_02609 0.32 +0.1
3,085,313 + PFR28_02609 0.32 +0.1
3,085,313 + PFR28_02609 0.32 +0.7
3,085,313 + PFR28_02609 0.32 +0.1
3,085,313 + PFR28_02609 0.32 -1.2
3,085,314 - PFR28_02609 0.32 +0.2
3,085,314 - PFR28_02609 0.32 -0.4
3,085,314 - PFR28_02609 0.32 +0.2
3,085,314 - PFR28_02609 0.32 -0.4
3,085,314 - PFR28_02609 0.32 -0.4
3,085,314 - PFR28_02609 0.32 +0.6
3,085,314 - PFR28_02609 0.32 -2.7
3,085,314 - PFR28_02609 0.32 -0.4
3,085,314 - PFR28_02609 0.32 +0.4
3,085,314 - PFR28_02609 0.32 +0.2
3,085,314 - PFR28_02609 0.32 +1.0
3,085,314 - PFR28_02609 0.32 +0.5
3,085,314 - PFR28_02609 0.32 +0.5
3,085,314 - PFR28_02609 0.32 +0.2
3,085,314 - PFR28_02609 0.32 +0.5
3,085,314 - PFR28_02609 0.32 -0.1
3,085,314 - PFR28_02609 0.32 -0.7
3,085,315 + PFR28_02609 0.32 -0.6
3,085,315 + PFR28_02609 0.32 +0.2
3,085,316 - PFR28_02609 0.33 +0.4
3,085,358 + PFR28_02609 0.37 -0.5
3,085,358 + PFR28_02609 0.37 -0.0
3,085,359 - PFR28_02609 0.37 -1.0
3,085,493 + PFR28_02609 0.51 -0.3
3,085,493 + PFR28_02609 0.51 -1.7
3,085,493 + PFR28_02609 0.51 +0.8
3,085,493 + PFR28_02609 0.51 +1.2
3,085,493 + PFR28_02609 0.51 +1.2
3,085,493 + PFR28_02609 0.51 -0.7
3,085,493 + PFR28_02609 0.51 -2.2
3,085,494 - PFR28_02609 0.51 +0.3
3,085,494 - PFR28_02609 0.51 -0.8
3,085,494 - PFR28_02609 0.51 -0.8
3,085,494 - PFR28_02609 0.51 +0.7
3,085,560 + PFR28_02609 0.58 -1.3
3,085,560 + PFR28_02609 0.58 +0.2
3,085,600 + PFR28_02609 0.62 -1.6

Or see this region's nucleotide sequence