Strain Fitness in Pseudomonas sp. RS175 around PFR28_02444

Experiment: L-Malic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C) 10 mM
2,912,299	+				+1.9
2,912,299	+				+0.0
2,912,299	+				-1.4
2,912,299	+				-0.1
2,912,299	+				-0.0
2,912,299	+				+0.1
2,912,299	+				+0.3
2,912,299	+				-0.3
2,912,299	+				-2.3
2,912,299	+				+0.4
2,912,299	+				-0.0
2,912,300	-				-0.5
2,912,300	-				+0.5
2,912,300	-				-0.6
2,912,300	-				+0.7
2,912,300	-				+1.9
2,912,300	-				-0.7
2,912,300	-				+0.6
2,912,300	-				-0.5
2,912,300	-				+1.3
2,912,300	-				+0.3
2,912,300	-				+0.1
2,912,300	-				+0.4
2,912,301	+				-0.1
2,912,301	+				-0.4
2,912,301	+				-2.3
2,912,301	+				+0.7
2,912,301	+				-0.3
2,912,301	+				+0.0
2,912,301	+				-0.5
2,912,301	+				-0.5
2,912,301	+				-1.2
2,912,301	+				-1.7
2,912,302	-				-0.2
2,912,302	-				+0.4
2,912,302	-				-2.5
2,912,302	-				-0.3
2,912,302	-				+0.4
2,912,302	-				+1.6
2,912,302	-				-0.1
2,912,302	-				+1.6
2,912,305	+				-1.8
2,912,305	+				+0.7
2,912,305	+				+0.9
2,912,305	+				+1.0
2,912,305	+				-0.4
2,912,305	+				-0.3
2,912,305	+				+0.6
2,912,305	+				+0.1
2,912,305	+				-0.1
2,912,306	-				-0.5
2,912,306	-				+0.1
2,912,306	-				-0.5
2,912,306	-				+0.5
2,912,306	-				+0.3
2,912,306	-				+0.2
2,912,306	-				+1.8
2,912,306	-				-1.1
2,912,306	-				-0.9
2,912,314	+				+0.6
2,912,315	-				-1.7
2,912,315	-				+0.6
2,912,362	+		PFR28_02443	0.12	-0.2
2,912,362	+		PFR28_02443	0.12	-2.3
2,912,363	-		PFR28_02443	0.13	-0.2
2,912,363	-		PFR28_02443	0.13	+0.6
2,912,363	-		PFR28_02443	0.13	-0.4
2,912,363	-		PFR28_02443	0.13	+0.8
2,912,363	-		PFR28_02443	0.13	+0.3
2,912,363	-		PFR28_02443	0.13	+0.4
2,912,363	-		PFR28_02443	0.13	+0.8
2,912,494	+		PFR28_02443	0.28	+0.4
2,912,495	-		PFR28_02443	0.28	-0.4
2,912,688	+		PFR28_02443	0.50	+1.5
2,912,688	+		PFR28_02443	0.50	+0.3
2,912,688	+		PFR28_02443	0.50	-1.9
2,912,689	-		PFR28_02443	0.50	-1.1
2,912,689	-		PFR28_02443	0.50	-0.3
2,912,708	-		PFR28_02443	0.53	+0.3
2,912,809	+		PFR28_02443	0.64	+0.1
2,912,809	+		PFR28_02443	0.64	+0.8
2,912,810	-		PFR28_02443	0.64	+0.9
2,912,810	-		PFR28_02443	0.64	-0.9
2,912,810	-		PFR28_02443	0.64	-1.3
2,912,810	-		PFR28_02443	0.64	+0.5
2,912,857	+		PFR28_02443	0.70	-1.6
2,912,857	+		PFR28_02443	0.70	-0.1
2,912,857	+		PFR28_02443	0.70	-0.4
2,912,857	+		PFR28_02443	0.70	+0.5
2,912,858	-		PFR28_02443	0.70	-0.1
2,912,858	-		PFR28_02443	0.70	+0.1
2,912,858	-		PFR28_02443	0.70	-2.0
2,912,858	-		PFR28_02443	0.70	-0.1
2,912,858	-		PFR28_02443	0.70	-0.0
2,912,858	-		PFR28_02443	0.70	+0.9
2,912,858	-		PFR28_02443	0.70	+0.7
2,912,858	-		PFR28_02443	0.70	-0.9
2,912,858	-		PFR28_02443	0.70	+0.4
2,912,858	-		PFR28_02443	0.70	-0.9
2,912,858	-		PFR28_02443	0.70	+1.3
2,912,858	-		PFR28_02443	0.70	-0.5
2,912,861	+		PFR28_02443	0.70	-0.1
2,912,861	+		PFR28_02443	0.70	-1.4
2,912,861	+		PFR28_02443	0.70	+0.8
2,912,861	+		PFR28_02443	0.70	+0.5
2,912,861	+		PFR28_02443	0.70	+1.6
2,912,861	+		PFR28_02443	0.70	-0.7
2,912,861	+		PFR28_02443	0.70	+0.4
2,912,862	-		PFR28_02443	0.70	-1.3
2,912,862	-		PFR28_02443	0.70	+1.0
2,912,862	-		PFR28_02443	0.70	-0.4
2,912,934	+		PFR28_02443	0.79	-0.3
2,912,934	+		PFR28_02443	0.79	+0.6
2,912,935	-		PFR28_02443	0.79	+0.4
2,912,935	-		PFR28_02443	0.79	+0.9
2,912,935	-		PFR28_02443	0.79	+0.7
2,912,935	-		PFR28_02443	0.79	-0.3
2,912,935	-		PFR28_02443	0.79	-0.2
2,912,935	-		PFR28_02443	0.79	-1.5
2,913,020	+		PFR28_02443	0.89	+0.9
2,913,020	+		PFR28_02443	0.89	+0.0
2,913,021	-		PFR28_02443	0.89	-0.8
2,913,088	+				+0.1
2,913,088	+				-1.1
2,913,088	+				-1.1
2,913,088	+				-2.5
2,913,089	-				+1.4
2,913,089	-				-1.2
2,913,089	-				+1.1
2,913,089	-				-1.5
2,913,089	-				-0.1
2,913,089	-				+1.3
2,913,115	+				-1.6
2,913,115	+				-0.1
2,913,115	+				-2.4
2,913,115	+				-1.5
2,913,116	-				-0.1
2,913,125	+				+0.6
2,913,125	+				+0.2
2,913,125	+				-1.9
2,913,126	-				+0.2
2,913,389	+		PFR28_02444	0.35	-0.8
2,913,390	-		PFR28_02444	0.35	-0.3
2,913,390	-		PFR28_02444	0.35	-0.1
2,913,413	+		PFR28_02444	0.39	-1.2
2,913,703	-				-1.5
2,913,717	+				+0.9
2,913,718	-				-0.4
2,913,730	+				+1.3
2,913,790	-				-2.9
2,913,808	+				+0.6
2,913,808	+				+0.0
2,913,808	+				+0.5
2,913,809	-				+0.6
2,913,809	-				+0.1
2,913,809	-				+1.5
2,913,866	+				-1.3
2,913,866	+				+0.2
2,913,867	-				+0.0
2,913,867	-				-0.9
2,913,867	-				+0.7
2,913,892	-				+0.5
2,913,892	-				+0.6
2,913,912	+				-0.2
2,913,912	+				-1.3
2,913,913	-				+0.2
2,913,913	-				-2.1
2,913,913	-				+0.7
2,913,913	-				-0.5
2,913,913	-				-0.8
2,913,978	+				-1.5
2,913,978	+				-1.7
2,913,979	-				-1.5
2,913,979	-				+0.4
2,914,072	+		PFR28_02445	0.14	-0.2
2,914,073	-		PFR28_02445	0.14	+0.6
2,914,073	-		PFR28_02445	0.14	+1.7
2,914,170	+		PFR28_02445	0.22	+0.3
2,914,170	+		PFR28_02445	0.22	+0.2
2,914,170	+		PFR28_02445	0.22	-0.9
2,914,171	-		PFR28_02445	0.22	-0.2
2,914,218	+		PFR28_02445	0.26	+0.6
2,914,218	+		PFR28_02445	0.26	+0.5
2,914,218	+		PFR28_02445	0.26	+1.0
2,914,218	+		PFR28_02445	0.26	+0.7
2,914,218	+		PFR28_02445	0.26	-0.5
2,914,218	+		PFR28_02445	0.26	-0.8
2,914,218	+		PFR28_02445	0.26	-0.8
2,914,218	+		PFR28_02445	0.26	-0.9
2,914,218	+		PFR28_02445	0.26	+1.3
2,914,218	+		PFR28_02445	0.26	-2.1
2,914,219	-		PFR28_02445	0.26	-1.4
2,914,219	-		PFR28_02445	0.26	-0.1
2,914,219	-		PFR28_02445	0.26	+0.4
2,914,219	-		PFR28_02445	0.26	+2.1
2,914,219	-		PFR28_02445	0.26	-0.8
2,914,300	-		PFR28_02445	0.32	-1.3
2,914,300	-		PFR28_02445	0.32	+1.7
2,914,410	+		PFR28_02445	0.41	-0.2
2,914,410	+		PFR28_02445	0.41	+1.1
2,914,410	+		PFR28_02445	0.41	-0.1
2,914,410	+		PFR28_02445	0.41	+1.9
2,914,410	+		PFR28_02445	0.41	+0.6
2,914,410	+		PFR28_02445	0.41	-0.9
2,914,410	+		PFR28_02445	0.41	-1.6
2,914,410	+		PFR28_02445	0.41	-0.1
2,914,411	-		PFR28_02445	0.41	+0.1
2,914,411	-		PFR28_02445	0.41	+0.4
2,914,411	-		PFR28_02445	0.41	-0.1
2,914,411	-		PFR28_02445	0.41	+0.0
2,914,411	-		PFR28_02445	0.41	-0.3