Strain Fitness in Pseudomonas sp. RS175 around PFR28_02302

Experiment: L-Malic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C) 10 mM
2,752,464	+		PFR28_02300	0.89	-0.8
2,752,626	-				+0.1
2,752,755	+		PFR28_02301	0.25	+0.1
2,752,755	+		PFR28_02301	0.25	-0.7
2,752,756	-		PFR28_02301	0.25	-0.7
2,752,756	-		PFR28_02301	0.25	-1.1
2,752,756	-		PFR28_02301	0.25	-0.9
2,752,909	+		PFR28_02301	0.57	+0.8
2,752,909	+		PFR28_02301	0.57	-0.3
2,752,910	-		PFR28_02301	0.57	+0.7
2,752,923	+		PFR28_02301	0.60	+0.3
2,752,923	+		PFR28_02301	0.60	+0.4
2,752,923	+		PFR28_02301	0.60	+0.1
2,752,924	-		PFR28_02301	0.60	-0.5
2,752,924	-		PFR28_02301	0.60	-1.0
2,753,000	+		PFR28_02301	0.76	+0.4
2,753,000	+		PFR28_02301	0.76	-0.2
2,753,000	+		PFR28_02301	0.76	-2.1
2,753,000	+		PFR28_02301	0.76	+0.9
2,753,000	+		PFR28_02301	0.76	-1.3
2,753,000	+		PFR28_02301	0.76	+1.2
2,753,000	+		PFR28_02301	0.76	+0.5
2,753,001	-		PFR28_02301	0.76	-2.1
2,753,001	-		PFR28_02301	0.76	+0.8
2,753,001	-		PFR28_02301	0.76	+0.2
2,753,001	-		PFR28_02301	0.76	-0.2
2,753,001	-		PFR28_02301	0.76	-0.7
2,753,001	-		PFR28_02301	0.76	-1.9
2,753,001	-		PFR28_02301	0.76	-0.1
2,753,001	-		PFR28_02301	0.76	-0.2
2,753,004	+		PFR28_02301	0.77	+1.0
2,753,004	+		PFR28_02301	0.77	-1.0
2,753,004	+		PFR28_02301	0.77	+0.3
2,753,004	+		PFR28_02301	0.77	+0.7
2,753,005	-		PFR28_02301	0.77	-1.8
2,753,005	-		PFR28_02301	0.77	-1.3
2,753,116	+				-0.2
2,753,116	+				-0.4
2,753,117	-				-1.2
2,753,122	+				-0.2
2,753,122	+				+0.2
2,753,123	-				-2.4
2,753,123	-				+0.4
2,753,123	-				-0.5
2,753,123	-				-0.5
2,753,276	-				+1.3
2,753,377	+				-0.0
2,753,383	+				+0.1
2,753,502	+		PFR28_02302	0.10	-3.3
2,753,505	+		PFR28_02302	0.11	+0.5
2,753,505	+		PFR28_02302	0.11	-0.6
2,753,505	+		PFR28_02302	0.11	-0.9
2,753,505	+		PFR28_02302	0.11	+0.1
2,753,506	-		PFR28_02302	0.11	+0.6
2,753,506	-		PFR28_02302	0.11	+1.4
2,753,506	-		PFR28_02302	0.11	+1.8
2,753,506	-		PFR28_02302	0.11	-2.1
2,753,511	+		PFR28_02302	0.11	+1.3
2,753,511	+		PFR28_02302	0.11	-0.4
2,753,511	+		PFR28_02302	0.11	+0.2
2,753,511	+		PFR28_02302	0.11	+0.6
2,753,512	-		PFR28_02302	0.12	-0.5
2,753,512	-		PFR28_02302	0.12	-0.7
2,753,512	-		PFR28_02302	0.12	-0.0
2,753,512	-		PFR28_02302	0.12	-1.9
2,753,512	-		PFR28_02302	0.12	-1.5
2,753,512	-		PFR28_02302	0.12	-0.8
2,753,512	-		PFR28_02302	0.12	+0.4
2,753,512	-		PFR28_02302	0.12	+0.3
2,753,512	-		PFR28_02302	0.12	-0.8
2,753,514	+		PFR28_02302	0.12	+0.4
2,753,514	+		PFR28_02302	0.12	-0.3
2,753,515	-		PFR28_02302	0.12	+0.5
2,753,601	+		PFR28_02302	0.21	+0.3
2,753,601	+		PFR28_02302	0.21	-0.4
2,753,601	+		PFR28_02302	0.21	-0.4
2,753,601	+		PFR28_02302	0.21	+0.3
2,753,602	-		PFR28_02302	0.21	-0.2
2,753,602	-		PFR28_02302	0.21	+0.9
2,753,639	-		PFR28_02302	0.25	+0.2
2,753,650	+		PFR28_02302	0.27	-0.4
2,753,650	+		PFR28_02302	0.27	-1.5
2,753,718	+		PFR28_02302	0.34	+1.2
2,753,718	+		PFR28_02302	0.34	-0.3
2,753,718	+		PFR28_02302	0.34	+0.2
2,753,718	+		PFR28_02302	0.34	+1.1
2,753,718	+		PFR28_02302	0.34	-0.1
2,753,719	-		PFR28_02302	0.34	+0.4
2,753,719	-		PFR28_02302	0.34	+1.1
2,753,719	-		PFR28_02302	0.34	-0.0
2,753,719	-		PFR28_02302	0.34	-0.5
2,753,719	-		PFR28_02302	0.34	-3.1
2,753,719	-		PFR28_02302	0.34	-1.1
2,753,719	-		PFR28_02302	0.34	+1.3
2,753,881	+		PFR28_02302	0.52	+0.8
2,753,894	+		PFR28_02302	0.53	+0.4
2,753,894	+		PFR28_02302	0.53	-0.3
2,753,894	+		PFR28_02302	0.53	+1.2
2,753,895	-		PFR28_02302	0.53	-0.1
2,753,895	-		PFR28_02302	0.53	-0.4
2,753,895	-		PFR28_02302	0.53	+0.2
2,753,938	-		PFR28_02302	0.58	-0.3
2,753,981	+		PFR28_02302	0.62	+1.2
2,753,982	-		PFR28_02302	0.62	+0.6
2,754,010	+		PFR28_02302	0.65	+0.7
2,754,010	+		PFR28_02302	0.65	+0.3
2,754,011	-		PFR28_02302	0.66	+1.0
2,754,095	+		PFR28_02302	0.75	+0.9
2,754,095	+		PFR28_02302	0.75	+0.9
2,754,095	+		PFR28_02302	0.75	+0.2
2,754,095	+		PFR28_02302	0.75	-0.1
2,754,096	-		PFR28_02302	0.75	+0.2
2,754,096	-		PFR28_02302	0.75	+0.7
2,754,096	-		PFR28_02302	0.75	-0.6
2,754,096	-		PFR28_02302	0.75	-1.9
2,754,180	-		PFR28_02302	0.84	+0.8
2,754,356	+				+0.2
2,754,356	+				+0.5
2,754,366	+				+0.8
2,754,366	+				+0.1
2,754,378	-				+0.2
2,754,389	-				-0.4
2,754,389	-				-1.8
2,754,393	-				-0.6
2,754,393	-				-1.2
2,754,422	-				-0.9
2,754,430	+				+0.6
2,754,681	+		PFR28_02303	0.36	+0.9
2,754,682	-		PFR28_02303	0.36	+1.2
2,754,756	+		PFR28_02303	0.57	-1.3
2,754,756	+		PFR28_02303	0.57	+0.7
2,754,757	-		PFR28_02303	0.58	+1.3
2,754,757	-		PFR28_02303	0.58	+1.7
2,754,783	+		PFR28_02303	0.65	-0.3
2,754,784	-		PFR28_02303	0.66	-0.9
2,754,987	+				-0.5
2,755,012	+				+0.7
2,755,012	+				+1.6
2,755,012	+				+1.1
2,755,012	+				+1.0
2,755,013	-				-1.1
2,755,013	-				-0.6
2,755,013	-				+1.8
2,755,060	+		PFR28_02304	0.13	-0.1
2,755,060	+		PFR28_02304	0.13	-0.4
2,755,061	-		PFR28_02304	0.13	-1.2
2,755,137	-		PFR28_02304	0.21	-0.5
2,755,137	-		PFR28_02304	0.21	+0.6
2,755,180	+		PFR28_02304	0.25	+1.6
2,755,180	+		PFR28_02304	0.25	-0.1
2,755,180	+		PFR28_02304	0.25	-0.2
2,755,180	+		PFR28_02304	0.25	+0.5
2,755,181	-		PFR28_02304	0.25	-0.9
2,755,209	+		PFR28_02304	0.28	-1.9
2,755,209	+		PFR28_02304	0.28	-0.6
2,755,210	-		PFR28_02304	0.28	+0.4
2,755,210	-		PFR28_02304	0.28	-2.3
2,755,210	-		PFR28_02304	0.28	+0.4
2,755,210	-		PFR28_02304	0.28	+0.8
2,755,210	-		PFR28_02304	0.28	+0.2
2,755,285	+		PFR28_02304	0.35	-0.7
2,755,286	-		PFR28_02304	0.35	+0.5