Strain Fitness in Pseudomonas sp. RS175 around PFR28_01506

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01504 and PFR28_01505 are separated by 77 nucleotidesPFR28_01505 and PFR28_01506 are separated by 120 nucleotidesPFR28_01506 and PFR28_01507 are separated by 234 nucleotides PFR28_01504: PFR28_01504 - HTH-type transcriptional activator RhaR, at 1,651,565 to 1,652,509 _01504 PFR28_01505: PFR28_01505 - putative protein YesE, at 1,652,587 to 1,653,012 _01505 PFR28_01506: PFR28_01506 - putative HTH-type transcriptional regulator YahB, at 1,653,133 to 1,654,038 _01506 PFR28_01507: PFR28_01507 - Dihydroanticapsin 7-dehydrogenase, at 1,654,273 to 1,655,037 _01507 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1652.134 kb on - strand, within PFR28_01504at 1652.292 kb on - strand, within PFR28_01504at 1652.480 kb on - strandat 1652.480 kb on - strandat 1652.636 kb on - strand, within PFR28_01505at 1652.699 kb on + strand, within PFR28_01505at 1652.699 kb on + strand, within PFR28_01505at 1652.700 kb on - strand, within PFR28_01505at 1652.711 kb on + strand, within PFR28_01505at 1652.779 kb on - strand, within PFR28_01505at 1652.779 kb on - strand, within PFR28_01505at 1652.791 kb on - strand, within PFR28_01505at 1652.791 kb on - strand, within PFR28_01505at 1652.801 kb on + strand, within PFR28_01505at 1652.851 kb on + strand, within PFR28_01505at 1653.800 kb on + strand, within PFR28_01506at 1653.800 kb on + strand, within PFR28_01506at 1653.800 kb on + strand, within PFR28_01506at 1653.800 kb on + strand, within PFR28_01506at 1653.800 kb on + strand, within PFR28_01506at 1653.800 kb on + strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.801 kb on - strand, within PFR28_01506at 1653.884 kb on - strand, within PFR28_01506at 1653.917 kb on + strand, within PFR28_01506at 1653.917 kb on + strand, within PFR28_01506at 1653.917 kb on + strand, within PFR28_01506at 1653.918 kb on - strand, within PFR28_01506at 1653.918 kb on - strand, within PFR28_01506at 1653.918 kb on - strand, within PFR28_01506at 1654.702 kb on + strand, within PFR28_01507at 1654.702 kb on + strand, within PFR28_01507at 1654.702 kb on + strand, within PFR28_01507at 1654.702 kb on + strand, within PFR28_01507at 1654.703 kb on - strand, within PFR28_01507at 1654.703 kb on - strand, within PFR28_01507at 1654.711 kb on + strand, within PFR28_01507at 1654.711 kb on + strand, within PFR28_01507at 1654.711 kb on + strand, within PFR28_01507at 1654.712 kb on - strand, within PFR28_01507at 1654.738 kb on + strand, within PFR28_01507at 1654.738 kb on + strand, within PFR28_01507at 1654.739 kb on - strand, within PFR28_01507

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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1,652,134 - PFR28_01504 0.60 +0.1
1,652,292 - PFR28_01504 0.77 -0.3
1,652,480 - -0.7
1,652,480 - -0.0
1,652,636 - PFR28_01505 0.12 -0.8
1,652,699 + PFR28_01505 0.26 -1.2
1,652,699 + PFR28_01505 0.26 +1.4
1,652,700 - PFR28_01505 0.27 -0.5
1,652,711 + PFR28_01505 0.29 +0.6
1,652,779 - PFR28_01505 0.45 -0.5
1,652,779 - PFR28_01505 0.45 +0.1
1,652,791 - PFR28_01505 0.48 -0.5
1,652,791 - PFR28_01505 0.48 -0.0
1,652,801 + PFR28_01505 0.50 +0.3
1,652,851 + PFR28_01505 0.62 -1.1
1,653,800 + PFR28_01506 0.74 +0.4
1,653,800 + PFR28_01506 0.74 -1.4
1,653,800 + PFR28_01506 0.74 -1.6
1,653,800 + PFR28_01506 0.74 +1.0
1,653,800 + PFR28_01506 0.74 +1.7
1,653,800 + PFR28_01506 0.74 +2.9
1,653,801 - PFR28_01506 0.74 -0.5
1,653,801 - PFR28_01506 0.74 -0.2
1,653,801 - PFR28_01506 0.74 -2.1
1,653,801 - PFR28_01506 0.74 +0.1
1,653,801 - PFR28_01506 0.74 +0.9
1,653,801 - PFR28_01506 0.74 +0.2
1,653,801 - PFR28_01506 0.74 -1.0
1,653,801 - PFR28_01506 0.74 -0.0
1,653,884 - PFR28_01506 0.83 -1.4
1,653,917 + PFR28_01506 0.87 -0.7
1,653,917 + PFR28_01506 0.87 -0.6
1,653,917 + PFR28_01506 0.87 -0.3
1,653,918 - PFR28_01506 0.87 -0.1
1,653,918 - PFR28_01506 0.87 -0.7
1,653,918 - PFR28_01506 0.87 -0.1
1,654,702 + PFR28_01507 0.56 -0.6
1,654,702 + PFR28_01507 0.56 +0.2
1,654,702 + PFR28_01507 0.56 -0.1
1,654,702 + PFR28_01507 0.56 -2.1
1,654,703 - PFR28_01507 0.56 -3.9
1,654,703 - PFR28_01507 0.56 +0.7
1,654,711 + PFR28_01507 0.57 +0.8
1,654,711 + PFR28_01507 0.57 +1.6
1,654,711 + PFR28_01507 0.57 -0.7
1,654,712 - PFR28_01507 0.57 -0.6
1,654,738 + PFR28_01507 0.61 -0.3
1,654,738 + PFR28_01507 0.61 -0.1
1,654,739 - PFR28_01507 0.61 +1.0

Or see this region's nucleotide sequence