Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00502 and PFR28_00503 are separated by 239 nucleotides PFR28_00503 and PFR28_00504 are separated by 13 nucleotides
PFR28_00502: PFR28_00502 - hypothetical protein, at 535,660 to 538,146
_00502
PFR28_00503: PFR28_00503 - Histidine transport ATP-binding protein HisP, at 538,386 to 539,150
_00503
PFR28_00504: PFR28_00504 - hypothetical protein, at 539,164 to 540,282
_00504
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.524 kb on - strand, within PFR28_00502 at 537.949 kb on - strand at 537.949 kb on - strand at 537.997 kb on + strand at 538.004 kb on + strand at 538.005 kb on - strand at 538.057 kb on + strand at 538.070 kb on - strand at 538.070 kb on - strand at 538.196 kb on - strand at 538.196 kb on - strand at 538.207 kb on + strand at 538.354 kb on + strand at 538.354 kb on + strand at 538.387 kb on + strand at 538.388 kb on - strand at 538.388 kb on - strand at 538.388 kb on - strand at 538.388 kb on - strand at 538.834 kb on - strand, within PFR28_00503 at 538.834 kb on - strand, within PFR28_00503 at 539.113 kb on + strand at 539.113 kb on + strand at 539.114 kb on - strand at 539.146 kb on + strand at 539.147 kb on - strand at 539.147 kb on - strand at 539.147 kb on - strand at 539.147 kb on - strand at 539.147 kb on - strand at 539.177 kb on - strand at 539.177 kb on - strand at 539.177 kb on - strand at 539.193 kb on - strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.261 kb on + strand at 539.262 kb on - strand at 539.262 kb on - strand at 539.262 kb on - strand at 539.262 kb on - strand at 539.372 kb on + strand, within PFR28_00504 at 539.373 kb on - strand, within PFR28_00504 at 539.492 kb on + strand, within PFR28_00504 at 539.492 kb on + strand, within PFR28_00504 at 539.702 kb on + strand, within PFR28_00504 at 539.702 kb on + strand, within PFR28_00504 at 539.703 kb on - strand, within PFR28_00504 at 539.747 kb on + strand, within PFR28_00504 at 539.747 kb on + strand, within PFR28_00504 at 539.748 kb on - strand, within PFR28_00504 at 539.748 kb on - strand, within PFR28_00504 at 539.748 kb on - strand, within PFR28_00504 at 539.748 kb on - strand, within PFR28_00504 at 539.848 kb on - strand, within PFR28_00504 at 540.019 kb on + strand, within PFR28_00504 at 540.020 kb on - strand, within PFR28_00504 at 540.020 kb on - strand, within PFR28_00504
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 537,524 - PFR28_00502 0.75 +0.7 537,949 - -0.0 537,949 - +0.4 537,997 + -3.1 538,004 + -1.2 538,005 - +0.0 538,057 + +0.7 538,070 - -0.4 538,070 - +0.0 538,196 - -0.1 538,196 - +2.7 538,207 + +0.8 538,354 + -0.2 538,354 + -0.9 538,387 + -0.2 538,388 - -1.1 538,388 - -0.6 538,388 - +0.8 538,388 - +0.6 538,834 - PFR28_00503 0.59 -1.1 538,834 - PFR28_00503 0.59 -2.4 539,113 + -0.8 539,113 + +0.7 539,114 - +0.2 539,146 + -1.4 539,147 - +0.5 539,147 - +0.3 539,147 - -0.3 539,147 - -2.1 539,147 - -0.9 539,177 - -1.5 539,177 - +1.4 539,177 - +1.0 539,193 - -1.6 539,261 + +0.7 539,261 + -0.7 539,261 + -0.5 539,261 + -0.4 539,261 + +0.2 539,261 + -0.2 539,261 + +0.4 539,262 - +0.5 539,262 - -2.3 539,262 - -0.4 539,262 - +0.2 539,372 + PFR28_00504 0.19 -1.7 539,373 - PFR28_00504 0.19 -0.1 539,492 + PFR28_00504 0.29 +0.4 539,492 + PFR28_00504 0.29 +1.0 539,702 + PFR28_00504 0.48 +1.1 539,702 + PFR28_00504 0.48 +0.5 539,703 - PFR28_00504 0.48 -0.7 539,747 + PFR28_00504 0.52 -0.3 539,747 + PFR28_00504 0.52 -0.7 539,748 - PFR28_00504 0.52 -2.1 539,748 - PFR28_00504 0.52 -1.3 539,748 - PFR28_00504 0.52 -0.9 539,748 - PFR28_00504 0.52 +0.8 539,848 - PFR28_00504 0.61 +0.8 540,019 + PFR28_00504 0.76 +0.5 540,020 - PFR28_00504 0.76 +2.0 540,020 - PFR28_00504 0.76 -1.3
Or see this region's nucleotide sequence