Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00435 and PFR28_00436 are separated by 3 nucleotides PFR28_00436 and PFR28_00437 are separated by 10 nucleotides PFR28_00437 and PFR28_00438 overlap by 4 nucleotides PFR28_00438 and PFR28_00439 overlap by 4 nucleotides
PFR28_00435: PFR28_00435 - hypothetical protein, at 477,740 to 478,252
_00435
PFR28_00436: PFR28_00436 - hypothetical protein, at 478,256 to 478,867
_00436
PFR28_00437: PFR28_00437 - hypothetical protein, at 478,878 to 479,210
_00437
PFR28_00438: PFR28_00438 - hypothetical protein, at 479,207 to 480,202
_00438
PFR28_00439: PFR28_00439 - hypothetical protein, at 480,199 to 480,834
_00439
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1 at 478.106 kb on + strand, within PFR28_00435 at 478.106 kb on + strand, within PFR28_00435 at 478.107 kb on - strand, within PFR28_00435 at 478.107 kb on - strand, within PFR28_00435 at 478.142 kb on + strand, within PFR28_00435 at 478.232 kb on + strand at 478.232 kb on + strand at 478.232 kb on + strand at 478.232 kb on + strand at 478.233 kb on - strand at 478.233 kb on - strand at 478.233 kb on - strand at 478.233 kb on - strand at 478.233 kb on - strand at 478.272 kb on + strand at 478.272 kb on + strand at 478.272 kb on + strand at 478.273 kb on - strand at 478.273 kb on - strand at 478.273 kb on - strand at 478.273 kb on - strand at 478.512 kb on + strand, within PFR28_00436 at 478.654 kb on + strand, within PFR28_00436 at 478.654 kb on + strand, within PFR28_00436 at 478.764 kb on + strand, within PFR28_00436 at 478.765 kb on - strand, within PFR28_00436 at 478.765 kb on - strand, within PFR28_00436 at 478.866 kb on - strand at 478.892 kb on + strand at 478.993 kb on - strand, within PFR28_00437 at 479.079 kb on + strand, within PFR28_00437 at 479.079 kb on + strand, within PFR28_00437 at 479.079 kb on + strand, within PFR28_00437 at 479.079 kb on + strand, within PFR28_00437 at 479.080 kb on - strand, within PFR28_00437 at 479.080 kb on - strand, within PFR28_00437 at 479.080 kb on - strand, within PFR28_00437 at 479.312 kb on + strand, within PFR28_00438 at 479.312 kb on + strand, within PFR28_00438 at 479.312 kb on + strand, within PFR28_00438 at 479.313 kb on - strand, within PFR28_00438 at 479.313 kb on - strand, within PFR28_00438 at 479.313 kb on - strand, within PFR28_00438 at 479.435 kb on + strand, within PFR28_00438 at 479.436 kb on - strand, within PFR28_00438 at 479.436 kb on - strand, within PFR28_00438 at 479.573 kb on + strand, within PFR28_00438 at 479.574 kb on - strand, within PFR28_00438 at 479.607 kb on - strand, within PFR28_00438 at 479.666 kb on - strand, within PFR28_00438 at 479.729 kb on + strand, within PFR28_00438 at 479.729 kb on + strand, within PFR28_00438 at 479.729 kb on + strand, within PFR28_00438 at 479.730 kb on - strand, within PFR28_00438 at 479.730 kb on - strand, within PFR28_00438 at 479.730 kb on - strand, within PFR28_00438 at 479.730 kb on - strand, within PFR28_00438 at 479.892 kb on + strand, within PFR28_00438 at 479.892 kb on + strand, within PFR28_00438 at 479.892 kb on + strand, within PFR28_00438 at 479.943 kb on - strand, within PFR28_00438 at 479.943 kb on - strand, within PFR28_00438 at 480.026 kb on + strand, within PFR28_00438 at 480.164 kb on + strand at 480.164 kb on + strand at 480.164 kb on + strand at 480.165 kb on - strand at 480.198 kb on + strand at 480.198 kb on + strand at 480.198 kb on + strand at 480.198 kb on + strand at 480.199 kb on - strand at 480.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 478,106 + PFR28_00435 0.71 +0.3 478,106 + PFR28_00435 0.71 -1.1 478,107 - PFR28_00435 0.72 -1.0 478,107 - PFR28_00435 0.72 +0.5 478,142 + PFR28_00435 0.78 +1.0 478,232 + +0.3 478,232 + +0.0 478,232 + +0.4 478,232 + +1.0 478,233 - -1.6 478,233 - -0.5 478,233 - -0.1 478,233 - +0.1 478,233 - -0.2 478,272 + +0.4 478,272 + -0.5 478,272 + +0.8 478,273 - -0.1 478,273 - -1.6 478,273 - +0.8 478,273 - -0.6 478,512 + PFR28_00436 0.42 -1.5 478,654 + PFR28_00436 0.65 +0.3 478,654 + PFR28_00436 0.65 -0.2 478,764 + PFR28_00436 0.83 +1.2 478,765 - PFR28_00436 0.83 -1.0 478,765 - PFR28_00436 0.83 +1.2 478,866 - -0.9 478,892 + -1.4 478,993 - PFR28_00437 0.35 -1.4 479,079 + PFR28_00437 0.60 -0.4 479,079 + PFR28_00437 0.60 +0.4 479,079 + PFR28_00437 0.60 -1.3 479,079 + PFR28_00437 0.60 -2.7 479,080 - PFR28_00437 0.61 -0.6 479,080 - PFR28_00437 0.61 -0.1 479,080 - PFR28_00437 0.61 -0.1 479,312 + PFR28_00438 0.11 -0.2 479,312 + PFR28_00438 0.11 -1.1 479,312 + PFR28_00438 0.11 +1.3 479,313 - PFR28_00438 0.11 +0.1 479,313 - PFR28_00438 0.11 +0.2 479,313 - PFR28_00438 0.11 -2.3 479,435 + PFR28_00438 0.23 +0.4 479,436 - PFR28_00438 0.23 -1.4 479,436 - PFR28_00438 0.23 +0.9 479,573 + PFR28_00438 0.37 +0.1 479,574 - PFR28_00438 0.37 -0.1 479,607 - PFR28_00438 0.40 +0.3 479,666 - PFR28_00438 0.46 -0.9 479,729 + PFR28_00438 0.52 +0.8 479,729 + PFR28_00438 0.52 -1.6 479,729 + PFR28_00438 0.52 -2.1 479,730 - PFR28_00438 0.53 -0.2 479,730 - PFR28_00438 0.53 +0.5 479,730 - PFR28_00438 0.53 -0.1 479,730 - PFR28_00438 0.53 -0.5 479,892 + PFR28_00438 0.69 -1.1 479,892 + PFR28_00438 0.69 -2.5 479,892 + PFR28_00438 0.69 +0.1 479,943 - PFR28_00438 0.74 +0.5 479,943 - PFR28_00438 0.74 +0.1 480,026 + PFR28_00438 0.82 -0.0 480,164 + +0.7 480,164 + -0.1 480,164 + +0.1 480,165 - -0.3 480,198 + -0.1 480,198 + +0.6 480,198 + -0.4 480,198 + -1.5 480,199 - +0.3 480,199 - -0.1
Or see this region's nucleotide sequence