Strain Fitness in Pseudomonas sp. RS175 around PFR28_00375

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00373 and PFR28_00374 are separated by 9 nucleotidesPFR28_00374 and PFR28_00375 are separated by 116 nucleotidesPFR28_00375 and PFR28_00376 are separated by 92 nucleotidesPFR28_00376 and PFR28_00377 are separated by 57 nucleotides PFR28_00373: PFR28_00373 - hypothetical protein, at 407,947 to 408,768 _00373 PFR28_00374: PFR28_00374 - hypothetical protein, at 408,778 to 409,476 _00374 PFR28_00375: PFR28_00375 - hypothetical protein, at 409,593 to 410,213 _00375 PFR28_00376: PFR28_00376 - Ribosomal RNA small subunit methyltransferase J, at 410,306 to 411,088 _00376 PFR28_00377: PFR28_00377 - hypothetical protein, at 411,146 to 411,781 _00377 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2at 408.661 kb on + strand, within PFR28_00373at 408.661 kb on + strand, within PFR28_00373at 408.794 kb on + strandat 408.794 kb on + strandat 408.794 kb on + strandat 408.794 kb on + strandat 408.925 kb on + strand, within PFR28_00374at 408.925 kb on + strand, within PFR28_00374at 408.926 kb on - strand, within PFR28_00374at 408.984 kb on + strand, within PFR28_00374at 409.049 kb on + strand, within PFR28_00374at 409.050 kb on - strand, within PFR28_00374at 409.050 kb on - strand, within PFR28_00374at 409.165 kb on + strand, within PFR28_00374at 409.165 kb on + strand, within PFR28_00374at 409.166 kb on - strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.222 kb on + strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.223 kb on - strand, within PFR28_00374at 409.387 kb on - strand, within PFR28_00374at 409.387 kb on - strand, within PFR28_00374at 409.414 kb on + strandat 409.414 kb on + strandat 409.414 kb on + strandat 409.415 kb on - strandat 409.415 kb on - strandat 409.415 kb on - strandat 409.415 kb on - strandat 409.415 kb on - strandat 409.499 kb on - strandat 409.499 kb on - strandat 409.568 kb on + strandat 409.569 kb on - strandat 409.569 kb on - strandat 409.569 kb on - strandat 409.569 kb on - strandat 409.589 kb on - strandat 410.050 kb on + strand, within PFR28_00375at 410.050 kb on + strand, within PFR28_00375at 410.050 kb on + strand, within PFR28_00375at 410.050 kb on + strand, within PFR28_00375at 410.050 kb on + strand, within PFR28_00375at 410.151 kb on - strand, within PFR28_00375at 410.162 kb on - strandat 410.162 kb on - strandat 410.187 kb on + strandat 410.537 kb on + strand, within PFR28_00376at 410.537 kb on + strand, within PFR28_00376at 410.538 kb on - strand, within PFR28_00376at 410.538 kb on - strand, within PFR28_00376at 410.538 kb on - strand, within PFR28_00376at 410.538 kb on - strand, within PFR28_00376at 410.538 kb on - strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.803 kb on + strand, within PFR28_00376at 410.804 kb on - strand, within PFR28_00376at 410.804 kb on - strand, within PFR28_00376at 410.804 kb on - strand, within PFR28_00376at 410.804 kb on - strand, within PFR28_00376at 410.804 kb on - strand, within PFR28_00376at 410.834 kb on + strand, within PFR28_00376at 410.834 kb on + strand, within PFR28_00376at 410.834 kb on + strand, within PFR28_00376at 410.835 kb on - strand, within PFR28_00376at 410.835 kb on - strand, within PFR28_00376at 410.835 kb on - strand, within PFR28_00376at 411.058 kb on + strandat 411.058 kb on + strandat 411.058 kb on + strandat 411.059 kb on - strandat 411.059 kb on - strandat 411.059 kb on - strandat 411.059 kb on - strandat 411.059 kb on - strandat 411.062 kb on + strandat 411.062 kb on + strandat 411.063 kb on - strandat 411.063 kb on - strandat 411.063 kb on - strandat 411.135 kb on + strandat 411.147 kb on + strandat 411.148 kb on - strandat 411.156 kb on + strandat 411.156 kb on + strandat 411.156 kb on + strandat 411.156 kb on + strandat 411.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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408,661 + PFR28_00373 0.87 -1.9
408,661 + PFR28_00373 0.87 -2.1
408,794 + -1.0
408,794 + +0.3
408,794 + -0.4
408,794 + +0.3
408,925 + PFR28_00374 0.21 +1.7
408,925 + PFR28_00374 0.21 -0.7
408,926 - PFR28_00374 0.21 +0.2
408,984 + PFR28_00374 0.29 -0.5
409,049 + PFR28_00374 0.39 -0.1
409,050 - PFR28_00374 0.39 -0.6
409,050 - PFR28_00374 0.39 -0.2
409,165 + PFR28_00374 0.55 +0.4
409,165 + PFR28_00374 0.55 -1.1
409,166 - PFR28_00374 0.56 -1.3
409,222 + PFR28_00374 0.64 +1.3
409,222 + PFR28_00374 0.64 +0.5
409,222 + PFR28_00374 0.64 +0.4
409,222 + PFR28_00374 0.64 -1.3
409,222 + PFR28_00374 0.64 -1.0
409,222 + PFR28_00374 0.64 -0.3
409,222 + PFR28_00374 0.64 -1.4
409,222 + PFR28_00374 0.64 +2.4
409,222 + PFR28_00374 0.64 +0.2
409,222 + PFR28_00374 0.64 -0.3
409,222 + PFR28_00374 0.64 +1.2
409,222 + PFR28_00374 0.64 -1.0
409,222 + PFR28_00374 0.64 -2.3
409,222 + PFR28_00374 0.64 -0.6
409,223 - PFR28_00374 0.64 -1.0
409,223 - PFR28_00374 0.64 -0.7
409,223 - PFR28_00374 0.64 +0.2
409,223 - PFR28_00374 0.64 -1.3
409,223 - PFR28_00374 0.64 -1.2
409,223 - PFR28_00374 0.64 -0.3
409,223 - PFR28_00374 0.64 +0.5
409,223 - PFR28_00374 0.64 -1.1
409,223 - PFR28_00374 0.64 +0.9
409,223 - PFR28_00374 0.64 -1.1
409,223 - PFR28_00374 0.64 +0.3
409,223 - PFR28_00374 0.64 -1.1
409,223 - PFR28_00374 0.64 -0.2
409,223 - PFR28_00374 0.64 -1.7
409,223 - PFR28_00374 0.64 +1.9
409,223 - PFR28_00374 0.64 +0.4
409,223 - PFR28_00374 0.64 +1.7
409,223 - PFR28_00374 0.64 -0.1
409,223 - PFR28_00374 0.64 +0.1
409,387 - PFR28_00374 0.87 -1.0
409,387 - PFR28_00374 0.87 -0.3
409,414 + +0.7
409,414 + -0.5
409,414 + +0.1
409,415 - -0.1
409,415 - +1.4
409,415 - +0.2
409,415 - -1.7
409,415 - -1.5
409,499 - -1.3
409,499 - +0.2
409,568 + +0.7
409,569 - -0.6
409,569 - -1.3
409,569 - +0.9
409,569 - -1.9
409,589 - -1.0
410,050 + PFR28_00375 0.74 -1.3
410,050 + PFR28_00375 0.74 -2.3
410,050 + PFR28_00375 0.74 +0.3
410,050 + PFR28_00375 0.74 -1.3
410,050 + PFR28_00375 0.74 -0.5
410,151 - PFR28_00375 0.90 +0.3
410,162 - -0.4
410,162 - -0.6
410,187 + -0.3
410,537 + PFR28_00376 0.30 -2.3
410,537 + PFR28_00376 0.30 +0.4
410,538 - PFR28_00376 0.30 -0.6
410,538 - PFR28_00376 0.30 -0.1
410,538 - PFR28_00376 0.30 +0.0
410,538 - PFR28_00376 0.30 -0.2
410,538 - PFR28_00376 0.30 +0.2
410,803 + PFR28_00376 0.63 +0.1
410,803 + PFR28_00376 0.63 -0.1
410,803 + PFR28_00376 0.63 +0.6
410,803 + PFR28_00376 0.63 -1.0
410,803 + PFR28_00376 0.63 +0.4
410,803 + PFR28_00376 0.63 +1.0
410,804 - PFR28_00376 0.64 -1.4
410,804 - PFR28_00376 0.64 -0.1
410,804 - PFR28_00376 0.64 -0.6
410,804 - PFR28_00376 0.64 +0.9
410,804 - PFR28_00376 0.64 -0.4
410,834 + PFR28_00376 0.67 -0.1
410,834 + PFR28_00376 0.67 -1.4
410,834 + PFR28_00376 0.67 -1.7
410,835 - PFR28_00376 0.68 +2.0
410,835 - PFR28_00376 0.68 -0.6
410,835 - PFR28_00376 0.68 -0.7
411,058 + -0.3
411,058 + +0.1
411,058 + +0.1
411,059 - +0.1
411,059 - -1.7
411,059 - -1.1
411,059 - -0.4
411,059 - +0.3
411,062 + -0.0
411,062 + -0.3
411,063 - -1.4
411,063 - +0.1
411,063 - -1.1
411,135 + -1.1
411,147 + -1.0
411,148 - -0.8
411,156 + -0.4
411,156 + -1.4
411,156 + +1.1
411,156 + -0.3
411,157 - -0.5

Or see this region's nucleotide sequence