Strain Fitness in Pseudomonas sp. RS175 around PFR28_00305

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00303 and PFR28_00304 are separated by 67 nucleotidesPFR28_00304 and PFR28_00305 are separated by 120 nucleotidesPFR28_00305 and PFR28_00306 are separated by 359 nucleotides PFR28_00303: PFR28_00303 - Omega-amidase YafV, at 331,066 to 331,857 _00303 PFR28_00304: PFR28_00304 - hypothetical protein, at 331,925 to 332,332 _00304 PFR28_00305: PFR28_00305 - 2-isopropylmalate synthase, at 332,453 to 334,132 _00305 PFR28_00306: PFR28_00306 - hypothetical protein, at 334,492 to 335,313 _00306 Position (kb) 332 333 334 335Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 331.513 kb on + strand, within PFR28_00303at 331.514 kb on - strand, within PFR28_00303at 331.570 kb on + strand, within PFR28_00303at 331.571 kb on - strand, within PFR28_00303at 331.571 kb on - strand, within PFR28_00303at 331.648 kb on + strand, within PFR28_00303at 331.648 kb on + strand, within PFR28_00303at 331.648 kb on + strand, within PFR28_00303at 331.648 kb on + strand, within PFR28_00303at 331.649 kb on - strand, within PFR28_00303at 331.649 kb on - strand, within PFR28_00303at 331.649 kb on - strand, within PFR28_00303at 331.652 kb on + strand, within PFR28_00303at 331.652 kb on + strand, within PFR28_00303at 331.653 kb on - strand, within PFR28_00303at 331.697 kb on - strand, within PFR28_00303at 331.933 kb on + strandat 331.933 kb on + strandat 331.934 kb on - strandat 331.975 kb on + strand, within PFR28_00304at 331.993 kb on + strand, within PFR28_00304at 331.994 kb on - strand, within PFR28_00304at 332.292 kb on + strandat 332.546 kb on + strandat 332.589 kb on + strandat 332.589 kb on + strandat 332.589 kb on + strandat 332.590 kb on - strandat 332.590 kb on - strandat 332.590 kb on - strandat 332.590 kb on - strandat 332.590 kb on - strandat 332.637 kb on + strand, within PFR28_00305at 332.637 kb on + strand, within PFR28_00305at 332.638 kb on - strand, within PFR28_00305at 332.638 kb on - strand, within PFR28_00305at 332.638 kb on - strand, within PFR28_00305at 332.805 kb on + strand, within PFR28_00305at 332.947 kb on - strand, within PFR28_00305at 332.964 kb on + strand, within PFR28_00305at 332.964 kb on + strand, within PFR28_00305at 333.015 kb on + strand, within PFR28_00305at 333.016 kb on - strand, within PFR28_00305at 333.016 kb on - strand, within PFR28_00305at 333.016 kb on - strand, within PFR28_00305at 333.016 kb on - strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.153 kb on + strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.154 kb on - strand, within PFR28_00305at 333.255 kb on + strand, within PFR28_00305at 333.255 kb on + strand, within PFR28_00305at 333.256 kb on - strand, within PFR28_00305at 333.256 kb on - strand, within PFR28_00305at 333.256 kb on - strand, within PFR28_00305at 333.256 kb on - strand, within PFR28_00305at 333.462 kb on + strand, within PFR28_00305at 333.462 kb on + strand, within PFR28_00305at 333.462 kb on + strand, within PFR28_00305at 333.463 kb on - strand, within PFR28_00305at 333.463 kb on - strand, within PFR28_00305at 333.463 kb on - strand, within PFR28_00305at 333.606 kb on + strand, within PFR28_00305at 333.606 kb on + strand, within PFR28_00305at 333.744 kb on + strand, within PFR28_00305at 333.744 kb on + strand, within PFR28_00305at 333.745 kb on - strand, within PFR28_00305at 333.745 kb on - strand, within PFR28_00305at 333.745 kb on - strand, within PFR28_00305at 334.102 kb on - strandat 334.102 kb on - strandat 334.147 kb on + strandat 334.148 kb on - strandat 334.148 kb on - strandat 334.148 kb on - strandat 334.414 kb on - strandat 334.656 kb on + strand, within PFR28_00306at 334.656 kb on + strand, within PFR28_00306at 334.656 kb on + strand, within PFR28_00306at 334.656 kb on + strand, within PFR28_00306at 334.656 kb on + strand, within PFR28_00306at 334.656 kb on + strand, within PFR28_00306at 334.657 kb on - strand, within PFR28_00306at 334.657 kb on - strand, within PFR28_00306at 334.657 kb on - strand, within PFR28_00306at 334.657 kb on - strand, within PFR28_00306at 334.657 kb on - strand, within PFR28_00306at 334.704 kb on + strand, within PFR28_00306at 334.704 kb on + strand, within PFR28_00306at 334.705 kb on - strand, within PFR28_00306at 334.705 kb on - strand, within PFR28_00306at 334.721 kb on + strand, within PFR28_00306at 334.721 kb on + strand, within PFR28_00306at 334.722 kb on - strand, within PFR28_00306at 334.722 kb on - strand, within PFR28_00306at 334.920 kb on - strand, within PFR28_00306at 334.933 kb on + strand, within PFR28_00306at 335.021 kb on + strand, within PFR28_00306at 335.030 kb on + strand, within PFR28_00306

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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331,513 + PFR28_00303 0.56 -1.0
331,514 - PFR28_00303 0.57 +0.4
331,570 + PFR28_00303 0.64 -0.2
331,571 - PFR28_00303 0.64 -1.9
331,571 - PFR28_00303 0.64 -0.2
331,648 + PFR28_00303 0.73 +2.9
331,648 + PFR28_00303 0.73 +0.3
331,648 + PFR28_00303 0.73 -1.0
331,648 + PFR28_00303 0.73 -0.9
331,649 - PFR28_00303 0.74 -2.4
331,649 - PFR28_00303 0.74 -0.9
331,649 - PFR28_00303 0.74 -0.0
331,652 + PFR28_00303 0.74 -1.3
331,652 + PFR28_00303 0.74 +0.2
331,653 - PFR28_00303 0.74 +0.2
331,697 - PFR28_00303 0.80 -0.4
331,933 + -0.8
331,933 + +1.0
331,934 - -2.3
331,975 + PFR28_00304 0.12 -2.8
331,993 + PFR28_00304 0.17 +0.9
331,994 - PFR28_00304 0.17 +0.1
332,292 + +0.3
332,546 + +1.5
332,589 + -4.6
332,589 + -5.3
332,589 + -3.8
332,590 - -0.4
332,590 - -1.5
332,590 - -1.3
332,590 - -2.3
332,590 - -1.8
332,637 + PFR28_00305 0.11 +0.0
332,637 + PFR28_00305 0.11 +0.0
332,638 - PFR28_00305 0.11 -0.9
332,638 - PFR28_00305 0.11 +1.5
332,638 - PFR28_00305 0.11 +1.5
332,805 + PFR28_00305 0.21 -0.2
332,947 - PFR28_00305 0.29 -3.9
332,964 + PFR28_00305 0.30 -2.9
332,964 + PFR28_00305 0.30 -4.5
333,015 + PFR28_00305 0.33 -3.3
333,016 - PFR28_00305 0.34 -1.1
333,016 - PFR28_00305 0.34 -4.4
333,016 - PFR28_00305 0.34 -4.8
333,016 - PFR28_00305 0.34 -3.4
333,153 + PFR28_00305 0.42 +1.9
333,153 + PFR28_00305 0.42 -3.5
333,153 + PFR28_00305 0.42 -3.1
333,153 + PFR28_00305 0.42 -4.5
333,153 + PFR28_00305 0.42 -2.4
333,153 + PFR28_00305 0.42 -4.0
333,153 + PFR28_00305 0.42 -2.8
333,153 + PFR28_00305 0.42 -3.3
333,154 - PFR28_00305 0.42 -3.7
333,154 - PFR28_00305 0.42 -4.5
333,154 - PFR28_00305 0.42 -4.5
333,154 - PFR28_00305 0.42 -4.6
333,154 - PFR28_00305 0.42 -5.0
333,154 - PFR28_00305 0.42 -3.1
333,255 + PFR28_00305 0.48 -3.3
333,255 + PFR28_00305 0.48 -3.4
333,256 - PFR28_00305 0.48 -3.0
333,256 - PFR28_00305 0.48 -1.1
333,256 - PFR28_00305 0.48 -5.1
333,256 - PFR28_00305 0.48 -0.9
333,462 + PFR28_00305 0.60 +1.5
333,462 + PFR28_00305 0.60 -4.6
333,462 + PFR28_00305 0.60 -4.6
333,463 - PFR28_00305 0.60 -2.0
333,463 - PFR28_00305 0.60 -1.1
333,463 - PFR28_00305 0.60 -3.2
333,606 + PFR28_00305 0.69 -4.1
333,606 + PFR28_00305 0.69 -3.7
333,744 + PFR28_00305 0.77 -4.3
333,744 + PFR28_00305 0.77 -1.1
333,745 - PFR28_00305 0.77 -4.0
333,745 - PFR28_00305 0.77 -2.0
333,745 - PFR28_00305 0.77 -2.3
334,102 - -4.2
334,102 - -1.7
334,147 + -5.0
334,148 - +0.6
334,148 - +0.8
334,148 - +0.9
334,414 - +1.6
334,656 + PFR28_00306 0.20 +1.0
334,656 + PFR28_00306 0.20 +0.5
334,656 + PFR28_00306 0.20 -0.0
334,656 + PFR28_00306 0.20 -1.5
334,656 + PFR28_00306 0.20 +0.9
334,656 + PFR28_00306 0.20 -0.3
334,657 - PFR28_00306 0.20 +1.0
334,657 - PFR28_00306 0.20 -0.0
334,657 - PFR28_00306 0.20 -0.2
334,657 - PFR28_00306 0.20 +0.2
334,657 - PFR28_00306 0.20 +1.2
334,704 + PFR28_00306 0.26 +1.0
334,704 + PFR28_00306 0.26 -0.3
334,705 - PFR28_00306 0.26 +1.2
334,705 - PFR28_00306 0.26 -2.3
334,721 + PFR28_00306 0.28 -0.0
334,721 + PFR28_00306 0.28 -0.5
334,722 - PFR28_00306 0.28 +1.5
334,722 - PFR28_00306 0.28 +0.6
334,920 - PFR28_00306 0.52 -0.1
334,933 + PFR28_00306 0.54 -0.6
335,021 + PFR28_00306 0.64 -3.3
335,030 + PFR28_00306 0.65 -1.1

Or see this region's nucleotide sequence