Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00291 and PFR28_00292 are separated by 14 nucleotides PFR28_00292 and PFR28_00293 are separated by 92 nucleotides PFR28_00293 and PFR28_00294 are separated by 27 nucleotides PFR28_00294 and PFR28_00295 are separated by 12 nucleotides PFR28_00295 and PFR28_00296 overlap by 1 nucleotides
PFR28_00291: PFR28_00291 - 2Fe-2S ferredoxin, at 319,776 to 320,117
_00291
PFR28_00292: PFR28_00292 - Protein IscX, at 320,132 to 320,332
_00292
PFR28_00293: PFR28_00293 - Nucleoside diphosphate kinase, at 320,425 to 320,850
_00293
PFR28_00294: PFR28_00294 - Dual-specificity RNA methyltransferase RlmN, at 320,878 to 322,026
_00294
PFR28_00295: PFR28_00295 - hypothetical protein, at 322,039 to 322,797
_00295
PFR28_00296: PFR28_00296 - Cytoskeleton protein RodZ, at 322,797 to 323,825
_00296
Position (kb) 320
321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.196 kb on + strand, within PFR28_00292 at 320.197 kb on - strand, within PFR28_00292 at 320.197 kb on - strand, within PFR28_00292 at 320.207 kb on + strand, within PFR28_00292 at 320.207 kb on + strand, within PFR28_00292 at 320.338 kb on + strand at 320.338 kb on + strand at 320.338 kb on + strand at 320.338 kb on + strand at 320.343 kb on + strand at 320.343 kb on + strand at 320.351 kb on + strand at 320.389 kb on + strand at 320.848 kb on + strand at 320.848 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.852 kb on + strand at 320.981 kb on + strand at 321.172 kb on + strand, within PFR28_00294 at 321.270 kb on + strand, within PFR28_00294 at 321.270 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.604 kb on + strand, within PFR28_00294 at 321.612 kb on + strand, within PFR28_00294 at 321.613 kb on - strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.640 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294 at 321.682 kb on + strand, within PFR28_00294 at 321.961 kb on + strand at 321.961 kb on + strand at 321.962 kb on - strand at 321.962 kb on - strand at 321.962 kb on - strand at 321.962 kb on - strand at 322.024 kb on + strand at 322.024 kb on + strand at 322.025 kb on - strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.038 kb on + strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.039 kb on - strand at 322.108 kb on + strand at 322.109 kb on - strand at 322.109 kb on - strand at 322.156 kb on + strand, within PFR28_00295 at 322.156 kb on + strand, within PFR28_00295 at 322.156 kb on + strand, within PFR28_00295 at 322.156 kb on + strand, within PFR28_00295 at 322.157 kb on - strand, within PFR28_00295 at 322.157 kb on - strand, within PFR28_00295 at 322.157 kb on - strand, within PFR28_00295 at 322.157 kb on - strand, within PFR28_00295 at 322.277 kb on + strand, within PFR28_00295 at 322.369 kb on + strand, within PFR28_00295 at 322.370 kb on - strand, within PFR28_00295 at 322.370 kb on - strand, within PFR28_00295 at 322.370 kb on - strand, within PFR28_00295 at 322.370 kb on - strand, within PFR28_00295 at 322.384 kb on + strand, within PFR28_00295 at 322.399 kb on + strand, within PFR28_00295 at 322.411 kb on + strand, within PFR28_00295 at 322.411 kb on + strand, within PFR28_00295 at 322.411 kb on + strand, within PFR28_00295 at 322.411 kb on + strand, within PFR28_00295 at 322.412 kb on - strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.609 kb on + strand, within PFR28_00295 at 322.627 kb on + strand, within PFR28_00295 at 322.627 kb on + strand, within PFR28_00295 at 322.630 kb on + strand, within PFR28_00295 at 322.630 kb on + strand, within PFR28_00295 at 322.630 kb on + strand, within PFR28_00295 at 322.630 kb on + strand, within PFR28_00295 at 322.630 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.668 kb on + strand, within PFR28_00295 at 322.673 kb on + strand, within PFR28_00295 at 322.771 kb on + strand at 322.780 kb on + strand at 322.780 kb on + strand at 322.780 kb on + strand at 322.780 kb on + strand at 322.780 kb on + strand at 322.973 kb on + strand, within PFR28_00296 at 322.973 kb on + strand, within PFR28_00296
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 320,196 + PFR28_00292 0.32 -2.6 320,196 + PFR28_00292 0.32 -2.0 320,196 + PFR28_00292 0.32 +0.3 320,196 + PFR28_00292 0.32 -1.0 320,197 - PFR28_00292 0.32 -0.4 320,197 - PFR28_00292 0.32 -0.7 320,207 + PFR28_00292 0.37 +0.8 320,207 + PFR28_00292 0.37 +1.3 320,338 + -0.1 320,338 + +0.9 320,338 + +0.0 320,338 + +2.1 320,343 + -0.5 320,343 + +0.1 320,351 + -1.1 320,389 + -0.5 320,848 + -1.1 320,848 + -1.2 320,852 + -2.4 320,852 + -0.4 320,852 + +0.5 320,852 + -1.7 320,852 + +0.3 320,852 + -0.4 320,852 + +0.9 320,981 + +0.6 321,172 + PFR28_00294 0.26 -3.6 321,270 + PFR28_00294 0.34 -2.0 321,270 + PFR28_00294 0.34 +1.5 321,604 + PFR28_00294 0.63 -0.2 321,604 + PFR28_00294 0.63 -1.4 321,604 + PFR28_00294 0.63 -2.1 321,612 + PFR28_00294 0.64 +2.3 321,613 - PFR28_00294 0.64 +0.2 321,640 + PFR28_00294 0.66 -1.7 321,640 + PFR28_00294 0.66 -0.4 321,640 + PFR28_00294 0.66 -0.1 321,640 + PFR28_00294 0.66 -0.4 321,640 + PFR28_00294 0.66 -1.0 321,682 + PFR28_00294 0.70 -2.4 321,682 + PFR28_00294 0.70 -0.5 321,682 + PFR28_00294 0.70 -1.0 321,961 + -1.5 321,961 + +0.8 321,962 - -1.7 321,962 - +1.5 321,962 - -0.8 321,962 - -0.5 322,024 + -0.5 322,024 + -0.8 322,025 - +1.1 322,038 + -0.2 322,038 + -1.5 322,038 + -0.2 322,038 + +0.8 322,038 + +0.2 322,038 + -1.2 322,038 + -2.8 322,038 + +0.1 322,038 + -1.0 322,038 + -0.4 322,038 + -0.7 322,038 + -1.5 322,038 + -0.3 322,038 + -0.9 322,038 + -1.2 322,039 - -0.7 322,039 - +1.1 322,039 - +1.1 322,039 - +0.7 322,039 - +1.1 322,039 - +1.3 322,039 - -0.9 322,039 - +0.3 322,039 - +1.2 322,039 - -0.0 322,039 - -1.0 322,039 - -0.9 322,039 - +0.8 322,108 + -2.0 322,109 - -2.4 322,109 - -0.1 322,156 + PFR28_00295 0.15 -0.5 322,156 + PFR28_00295 0.15 +1.1 322,156 + PFR28_00295 0.15 -0.3 322,156 + PFR28_00295 0.15 +0.5 322,157 - PFR28_00295 0.16 +0.8 322,157 - PFR28_00295 0.16 -1.3 322,157 - PFR28_00295 0.16 -2.6 322,157 - PFR28_00295 0.16 -1.0 322,277 + PFR28_00295 0.31 -0.6 322,369 + PFR28_00295 0.43 +0.6 322,370 - PFR28_00295 0.44 +0.7 322,370 - PFR28_00295 0.44 +0.5 322,370 - PFR28_00295 0.44 -1.4 322,370 - PFR28_00295 0.44 -0.5 322,384 + PFR28_00295 0.45 -0.1 322,399 + PFR28_00295 0.47 -0.3 322,411 + PFR28_00295 0.49 -0.4 322,411 + PFR28_00295 0.49 +0.7 322,411 + PFR28_00295 0.49 +0.5 322,411 + PFR28_00295 0.49 -0.9 322,412 - PFR28_00295 0.49 +1.5 322,609 + PFR28_00295 0.75 -0.0 322,609 + PFR28_00295 0.75 +0.6 322,609 + PFR28_00295 0.75 +2.1 322,609 + PFR28_00295 0.75 -1.0 322,609 + PFR28_00295 0.75 +0.2 322,609 + PFR28_00295 0.75 -1.5 322,609 + PFR28_00295 0.75 -0.7 322,609 + PFR28_00295 0.75 +0.7 322,627 + PFR28_00295 0.77 +1.8 322,627 + PFR28_00295 0.77 -1.3 322,630 + PFR28_00295 0.78 -0.4 322,630 + PFR28_00295 0.78 -0.0 322,630 + PFR28_00295 0.78 -2.5 322,630 + PFR28_00295 0.78 -0.1 322,630 + PFR28_00295 0.78 -0.1 322,668 + PFR28_00295 0.83 -1.5 322,668 + PFR28_00295 0.83 -2.9 322,668 + PFR28_00295 0.83 -0.0 322,668 + PFR28_00295 0.83 -0.8 322,668 + PFR28_00295 0.83 +0.1 322,668 + PFR28_00295 0.83 -0.4 322,673 + PFR28_00295 0.84 +1.5 322,771 + +0.2 322,780 + -1.0 322,780 + +0.9 322,780 + -0.4 322,780 + +1.0 322,780 + -0.0 322,973 + PFR28_00296 0.17 +1.3 322,973 + PFR28_00296 0.17 +1.3
Or see this region's nucleotide sequence