Strain Fitness in Pseudomonas sp. RS175 around PFR28_00268

Experiment: L-Malic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00266 and PFR28_00267 are separated by 216 nucleotidesPFR28_00267 and PFR28_00268 are separated by 1 nucleotidesPFR28_00268 and PFR28_00269 are separated by 77 nucleotidesPFR28_00269 and PFR28_00270 are separated by 19 nucleotides PFR28_00266: PFR28_00266 - hypothetical protein, at 295,887 to 296,972 _00266 PFR28_00267: PFR28_00267 - Protein rof, at 297,189 to 297,455 _00267 PFR28_00268: PFR28_00268 - hypothetical protein, at 297,457 to 297,717 _00268 PFR28_00269: PFR28_00269 - 4-hydroxy-tetrahydrodipicolinate synthase, at 297,795 to 298,682 _00269 PFR28_00270: PFR28_00270 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 298,702 to 299,484 _00270 Position (kb) 297 298Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.470 kb on + strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.471 kb on - strand, within PFR28_00266at 296.511 kb on - strand, within PFR28_00266at 296.608 kb on + strand, within PFR28_00266at 296.609 kb on - strand, within PFR28_00266at 296.944 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.964 kb on + strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.965 kb on - strandat 296.979 kb on + strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.980 kb on - strandat 296.997 kb on - strandat 297.036 kb on - strandat 297.172 kb on + strandat 297.172 kb on + strandat 297.172 kb on + strandat 297.395 kb on - strand, within PFR28_00267at 297.415 kb on + strand, within PFR28_00267at 297.415 kb on + strand, within PFR28_00267at 297.416 kb on - strand, within PFR28_00267at 297.446 kb on - strandat 297.446 kb on - strandat 297.668 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.688 kb on + strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.689 kb on - strand, within PFR28_00268at 297.701 kb on + strandat 297.701 kb on + strandat 297.701 kb on + strandat 297.702 kb on - strandat 297.702 kb on - strandat 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.964 kb on + strand, within PFR28_00269at 297.965 kb on - strand, within PFR28_00269at 298.012 kb on + strand, within PFR28_00269at 298.012 kb on + strand, within PFR28_00269at 298.012 kb on + strand, within PFR28_00269at 298.114 kb on + strand, within PFR28_00269at 298.115 kb on - strand, within PFR28_00269at 298.115 kb on - strand, within PFR28_00269at 298.115 kb on - strand, within PFR28_00269at 298.270 kb on + strand, within PFR28_00269at 298.270 kb on + strand, within PFR28_00269at 298.270 kb on + strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.271 kb on - strand, within PFR28_00269at 298.348 kb on + strand, within PFR28_00269at 298.519 kb on + strand, within PFR28_00269at 298.519 kb on + strand, within PFR28_00269

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM
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296,470 + PFR28_00266 0.54 -0.4
296,470 + PFR28_00266 0.54 -0.6
296,470 + PFR28_00266 0.54 -0.9
296,470 + PFR28_00266 0.54 -0.3
296,470 + PFR28_00266 0.54 +0.6
296,470 + PFR28_00266 0.54 -2.3
296,470 + PFR28_00266 0.54 -3.7
296,470 + PFR28_00266 0.54 -2.1
296,470 + PFR28_00266 0.54 -0.3
296,471 - PFR28_00266 0.54 -0.0
296,471 - PFR28_00266 0.54 -0.0
296,471 - PFR28_00266 0.54 -1.1
296,471 - PFR28_00266 0.54 -0.3
296,471 - PFR28_00266 0.54 -3.7
296,511 - PFR28_00266 0.57 -0.8
296,608 + PFR28_00266 0.66 +0.1
296,609 - PFR28_00266 0.66 -1.5
296,944 + -1.1
296,964 + +0.2
296,964 + +0.6
296,964 + +0.2
296,964 + +0.0
296,965 - -3.0
296,965 - +0.6
296,965 - +1.3
296,965 - -0.8
296,965 - -0.7
296,965 - +0.1
296,979 + -1.0
296,980 - -0.3
296,980 - +0.2
296,980 - -0.5
296,980 - +0.7
296,997 - -2.3
297,036 - -0.4
297,172 + +0.6
297,172 + +0.1
297,172 + -0.4
297,395 - PFR28_00267 0.77 -0.7
297,415 + PFR28_00267 0.85 +0.2
297,415 + PFR28_00267 0.85 -1.4
297,416 - PFR28_00267 0.85 +0.6
297,446 - -2.8
297,446 - +0.8
297,668 + PFR28_00268 0.81 -0.1
297,688 + PFR28_00268 0.89 -0.5
297,688 + PFR28_00268 0.89 -0.5
297,688 + PFR28_00268 0.89 -0.1
297,688 + PFR28_00268 0.89 +0.3
297,688 + PFR28_00268 0.89 +0.0
297,688 + PFR28_00268 0.89 -0.1
297,688 + PFR28_00268 0.89 -1.7
297,689 - PFR28_00268 0.89 +1.7
297,689 - PFR28_00268 0.89 -1.7
297,689 - PFR28_00268 0.89 -3.7
297,689 - PFR28_00268 0.89 -0.4
297,689 - PFR28_00268 0.89 -1.0
297,701 + -0.5
297,701 + -2.3
297,701 + -2.2
297,702 - -2.6
297,702 - -0.9
297,964 + PFR28_00269 0.19 +0.6
297,964 + PFR28_00269 0.19 +0.5
297,964 + PFR28_00269 0.19 -0.1
297,964 + PFR28_00269 0.19 +1.2
297,964 + PFR28_00269 0.19 +0.3
297,964 + PFR28_00269 0.19 +2.0
297,965 - PFR28_00269 0.19 -0.5
298,012 + PFR28_00269 0.24 -0.5
298,012 + PFR28_00269 0.24 -0.4
298,012 + PFR28_00269 0.24 -0.3
298,114 + PFR28_00269 0.36 +2.5
298,115 - PFR28_00269 0.36 -0.1
298,115 - PFR28_00269 0.36 +0.0
298,115 - PFR28_00269 0.36 -0.8
298,270 + PFR28_00269 0.53 -1.3
298,270 + PFR28_00269 0.53 +0.7
298,270 + PFR28_00269 0.53 +0.0
298,271 - PFR28_00269 0.54 -0.5
298,271 - PFR28_00269 0.54 +1.0
298,271 - PFR28_00269 0.54 -1.4
298,271 - PFR28_00269 0.54 -1.0
298,271 - PFR28_00269 0.54 -0.4
298,271 - PFR28_00269 0.54 +0.1
298,271 - PFR28_00269 0.54 +0.0
298,348 + PFR28_00269 0.62 -0.1
298,519 + PFR28_00269 0.82 +0.5
298,519 + PFR28_00269 0.82 -0.5

Or see this region's nucleotide sequence