Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00192 and PFR28_00193 are separated by 183 nucleotides PFR28_00193 and PFR28_00194 are separated by 9 nucleotides
PFR28_00192: PFR28_00192 - GTP cyclohydrolase 1 type 2, at 215,905 to 216,663
_00192
PFR28_00193: PFR28_00193 - Sulfate adenylyltransferase subunit 2, at 216,847 to 217,764
_00193
PFR28_00194: PFR28_00194 - Bifunctional enzyme CysN/CysC, at 217,774 to 219,672
_00194
Position (kb) 216
217
218 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.859 kb on + strand at 215.859 kb on + strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.889 kb on - strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.913 kb on - strand at 215.913 kb on - strand at 215.974 kb on + strand at 215.974 kb on + strand at 215.996 kb on + strand, within PFR28_00192 at 215.997 kb on - strand, within PFR28_00192 at 216.106 kb on + strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.196 kb on + strand, within PFR28_00192 at 216.197 kb on - strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.604 kb on + strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.671 kb on + strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.710 kb on + strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.738 kb on - strand at 216.768 kb on + strand at 216.768 kb on + strand at 216.769 kb on - strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.787 kb on - strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.843 kb on - strand at 216.843 kb on - strand at 216.943 kb on + strand, within PFR28_00193 at 216.943 kb on + strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.355 kb on - strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193 at 217.757 kb on - strand at 217.763 kb on - strand at 217.816 kb on + strand at 217.817 kb on - strand at 217.927 kb on + strand at 217.927 kb on + strand at 217.927 kb on + strand at 217.928 kb on - strand at 217.990 kb on - strand, within PFR28_00194 at 218.065 kb on + strand, within PFR28_00194 at 218.066 kb on - strand, within PFR28_00194 at 218.066 kb on - strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.434 kb on + strand, within PFR28_00194 at 218.435 kb on - strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.522 kb on - strand, within PFR28_00194
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 215,857 + +0.4 215,857 + -0.4 215,857 + -1.8 215,857 + -0.6 215,858 - -1.2 215,858 - -0.8 215,858 - -0.6 215,858 - -0.0 215,859 + -1.4 215,859 + +1.2 215,860 - -1.0 215,860 - -0.3 215,860 - +1.5 215,860 - -0.4 215,889 - +0.4 215,892 + +0.6 215,892 + +1.0 215,892 + +0.6 215,892 + +1.4 215,893 - -2.0 215,893 - -0.8 215,893 - -2.4 215,893 - +0.3 215,893 - +0.5 215,893 - -2.0 215,913 - +1.5 215,913 - +1.3 215,974 + +0.4 215,974 + -0.7 215,996 + PFR28_00192 0.12 -0.5 215,997 - PFR28_00192 0.12 +1.0 216,106 + PFR28_00192 0.26 +0.7 216,107 - PFR28_00192 0.27 +0.2 216,107 - PFR28_00192 0.27 -2.2 216,107 - PFR28_00192 0.27 +0.1 216,107 - PFR28_00192 0.27 +1.2 216,196 + PFR28_00192 0.38 +0.2 216,197 - PFR28_00192 0.38 +0.2 216,451 + PFR28_00192 0.72 +0.3 216,451 + PFR28_00192 0.72 +0.4 216,451 + PFR28_00192 0.72 +0.3 216,451 + PFR28_00192 0.72 -1.0 216,451 + PFR28_00192 0.72 -0.7 216,451 + PFR28_00192 0.72 -0.9 216,451 + PFR28_00192 0.72 -0.3 216,451 + PFR28_00192 0.72 +1.4 216,451 + PFR28_00192 0.72 -0.3 216,452 - PFR28_00192 0.72 -0.2 216,452 - PFR28_00192 0.72 -0.3 216,452 - PFR28_00192 0.72 -1.3 216,452 - PFR28_00192 0.72 -0.4 216,452 - PFR28_00192 0.72 +0.0 216,487 + PFR28_00192 0.77 -0.6 216,487 + PFR28_00192 0.77 -0.0 216,488 - PFR28_00192 0.77 -0.7 216,488 - PFR28_00192 0.77 -0.4 216,604 + -0.8 216,605 - +0.2 216,605 - +0.2 216,605 - +0.4 216,669 + -0.3 216,669 + -0.4 216,669 + +0.4 216,669 + -0.1 216,669 + +0.1 216,669 + +0.7 216,669 + +1.1 216,669 + -0.4 216,669 + +1.9 216,669 + +0.8 216,669 + +0.5 216,669 + +0.4 216,670 - -0.8 216,670 - -0.2 216,670 - +0.3 216,670 - -0.6 216,670 - +0.1 216,670 - -0.8 216,670 - -0.7 216,670 - -0.1 216,670 - -0.4 216,670 - -0.1 216,670 - -1.8 216,670 - -0.7 216,670 - +0.5 216,670 - +0.2 216,671 + +0.6 216,672 - -0.2 216,672 - -1.0 216,672 - -1.3 216,672 - +0.2 216,672 - -0.7 216,710 + -1.0 216,737 + -0.8 216,738 - -2.1 216,738 - -0.6 216,768 + +0.1 216,768 + +0.4 216,769 - -1.9 216,786 + +0.1 216,786 + -2.2 216,786 + +0.4 216,786 + +1.4 216,787 - -1.1 216,824 + -1.8 216,824 + -0.4 216,824 + -0.6 216,843 - -2.7 216,843 - -2.6 216,943 + PFR28_00193 0.10 -3.5 216,943 + PFR28_00193 0.10 +1.5 216,944 - PFR28_00193 0.11 -4.5 216,944 - PFR28_00193 0.11 -1.2 217,060 + PFR28_00193 0.23 -1.0 217,060 + PFR28_00193 0.23 -3.1 217,060 + PFR28_00193 0.23 -1.7 217,061 - PFR28_00193 0.23 -2.8 217,061 - PFR28_00193 0.23 -3.7 217,061 - PFR28_00193 0.23 -4.9 217,219 + PFR28_00193 0.41 -2.7 217,219 + PFR28_00193 0.41 -2.0 217,219 + PFR28_00193 0.41 -3.6 217,219 + PFR28_00193 0.41 -2.3 217,219 + PFR28_00193 0.41 -2.6 217,219 + PFR28_00193 0.41 -2.0 217,220 - PFR28_00193 0.41 -2.8 217,220 - PFR28_00193 0.41 -1.8 217,220 - PFR28_00193 0.41 -0.9 217,220 - PFR28_00193 0.41 -4.8 217,220 - PFR28_00193 0.41 -3.7 217,220 - PFR28_00193 0.41 -3.9 217,220 - PFR28_00193 0.41 -3.2 217,220 - PFR28_00193 0.41 -2.0 217,355 - PFR28_00193 0.55 -2.0 217,432 + PFR28_00193 0.64 -2.7 217,432 + PFR28_00193 0.64 -3.2 217,432 + PFR28_00193 0.64 -0.8 217,432 + PFR28_00193 0.64 -2.3 217,432 + PFR28_00193 0.64 -2.2 217,432 + PFR28_00193 0.64 -1.3 217,432 + PFR28_00193 0.64 -1.3 217,432 + PFR28_00193 0.64 -1.4 217,432 + PFR28_00193 0.64 -2.9 217,433 - PFR28_00193 0.64 -3.9 217,433 - PFR28_00193 0.64 -2.1 217,433 - PFR28_00193 0.64 -0.1 217,433 - PFR28_00193 0.64 -2.3 217,433 - PFR28_00193 0.64 -1.3 217,438 + PFR28_00193 0.64 -4.0 217,438 + PFR28_00193 0.64 -3.1 217,438 + PFR28_00193 0.64 -1.5 217,438 + PFR28_00193 0.64 -1.2 217,438 + PFR28_00193 0.64 +0.3 217,439 - PFR28_00193 0.64 -2.2 217,439 - PFR28_00193 0.64 -3.0 217,468 + PFR28_00193 0.68 -4.0 217,468 + PFR28_00193 0.68 -3.6 217,757 - -1.6 217,763 - -4.6 217,816 + -1.0 217,817 - -2.1 217,927 + -0.0 217,927 + -3.9 217,927 + -0.4 217,928 - -2.2 217,990 - PFR28_00194 0.11 -1.5 218,065 + PFR28_00194 0.15 -1.1 218,066 - PFR28_00194 0.15 -1.3 218,066 - PFR28_00194 0.15 -3.7 218,122 + PFR28_00194 0.18 -4.1 218,122 + PFR28_00194 0.18 +0.4 218,122 + PFR28_00194 0.18 -4.3 218,122 + PFR28_00194 0.18 -3.1 218,123 - PFR28_00194 0.18 -4.3 218,123 - PFR28_00194 0.18 -1.2 218,123 - PFR28_00194 0.18 -0.1 218,123 - PFR28_00194 0.18 -0.1 218,123 - PFR28_00194 0.18 -2.3 218,123 - PFR28_00194 0.18 -2.2 218,323 + PFR28_00194 0.29 -3.6 218,323 + PFR28_00194 0.29 -2.7 218,323 + PFR28_00194 0.29 -2.7 218,323 + PFR28_00194 0.29 -0.9 218,434 + PFR28_00194 0.35 -1.5 218,435 - PFR28_00194 0.35 -1.2 218,521 + PFR28_00194 0.39 -2.0 218,521 + PFR28_00194 0.39 -2.7 218,521 + PFR28_00194 0.39 -0.8 218,521 + PFR28_00194 0.39 -3.7 218,521 + PFR28_00194 0.39 +0.1 218,521 + PFR28_00194 0.39 -2.0 218,521 + PFR28_00194 0.39 -2.1 218,522 - PFR28_00194 0.39 -4.2
Or see this region's nucleotide sequence