Experiment: L-Malic (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00185 and PFR28_00186 are separated by 255 nucleotides PFR28_00186 and PFR28_00187 are separated by 122 nucleotides
PFR28_00185: PFR28_00185 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 206,763 to 208,028
_00185
PFR28_00186: PFR28_00186 - ATP phosphoribosyltransferase, at 208,284 to 208,919
_00186
PFR28_00187: PFR28_00187 - Histidinol dehydrogenase, at 209,042 to 210,379
_00187
Position (kb) 208
209 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 208.027 kb on - strand at 208.027 kb on - strand at 208.141 kb on + strand at 208.141 kb on + strand at 208.141 kb on + strand at 208.141 kb on + strand at 208.141 kb on + strand at 208.142 kb on - strand at 208.142 kb on - strand at 208.142 kb on - strand at 208.259 kb on + strand at 208.259 kb on + strand at 208.259 kb on + strand at 208.259 kb on + strand at 208.260 kb on - strand at 208.260 kb on - strand at 208.260 kb on - strand at 208.455 kb on + strand, within PFR28_00186 at 208.455 kb on + strand, within PFR28_00186 at 208.455 kb on + strand, within PFR28_00186 at 208.455 kb on + strand, within PFR28_00186 at 208.456 kb on - strand, within PFR28_00186 at 208.456 kb on - strand, within PFR28_00186 at 208.456 kb on - strand, within PFR28_00186 at 208.512 kb on + strand, within PFR28_00186 at 208.650 kb on + strand, within PFR28_00186 at 208.653 kb on + strand, within PFR28_00186 at 208.654 kb on - strand, within PFR28_00186 at 208.692 kb on + strand, within PFR28_00186 at 208.692 kb on + strand, within PFR28_00186 at 208.693 kb on - strand, within PFR28_00186 at 208.962 kb on - strand at 208.962 kb on - strand at 208.999 kb on - strand at 208.999 kb on - strand at 208.999 kb on - strand at 209.027 kb on + strand at 209.027 kb on + strand at 209.027 kb on + strand at 209.028 kb on - strand at 209.028 kb on - strand at 209.042 kb on - strand at 209.351 kb on + strand, within PFR28_00187 at 209.384 kb on + strand, within PFR28_00187 at 209.401 kb on + strand, within PFR28_00187 at 209.401 kb on + strand, within PFR28_00187 at 209.401 kb on + strand, within PFR28_00187 at 209.402 kb on - strand, within PFR28_00187 at 209.402 kb on - strand, within PFR28_00187 at 209.402 kb on - strand, within PFR28_00187 at 209.402 kb on - strand, within PFR28_00187 at 209.447 kb on + strand, within PFR28_00187 at 209.447 kb on + strand, within PFR28_00187 at 209.448 kb on - strand, within PFR28_00187 at 209.705 kb on + strand, within PFR28_00187 at 209.705 kb on + strand, within PFR28_00187 at 209.705 kb on + strand, within PFR28_00187 at 209.705 kb on + strand, within PFR28_00187 at 209.705 kb on + strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.706 kb on - strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.784 kb on + strand, within PFR28_00187 at 209.785 kb on - strand, within PFR28_00187 at 209.785 kb on - strand, within PFR28_00187 at 209.785 kb on - strand, within PFR28_00187 at 209.785 kb on - strand, within PFR28_00187 at 209.785 kb on - strand, within PFR28_00187
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) 10 mM remove 208,027 - -2.4 208,027 - -2.0 208,141 + -2.0 208,141 + -0.8 208,141 + +0.7 208,141 + -0.1 208,141 + +0.9 208,142 - +0.9 208,142 - -2.3 208,142 - -2.6 208,259 + -0.5 208,259 + +0.3 208,259 + -0.4 208,259 + -0.1 208,260 - -2.0 208,260 - -2.0 208,260 - -4.6 208,455 + PFR28_00186 0.27 -1.3 208,455 + PFR28_00186 0.27 -3.0 208,455 + PFR28_00186 0.27 -2.0 208,455 + PFR28_00186 0.27 -2.6 208,456 - PFR28_00186 0.27 -4.4 208,456 - PFR28_00186 0.27 -2.2 208,456 - PFR28_00186 0.27 -3.5 208,512 + PFR28_00186 0.36 -3.0 208,650 + PFR28_00186 0.58 -2.2 208,653 + PFR28_00186 0.58 -1.4 208,654 - PFR28_00186 0.58 -1.7 208,692 + PFR28_00186 0.64 -3.4 208,692 + PFR28_00186 0.64 -1.6 208,693 - PFR28_00186 0.64 -3.3 208,962 - -2.3 208,962 - -4.1 208,999 - -2.0 208,999 - -1.5 208,999 - -3.3 209,027 + -1.5 209,027 + -1.5 209,027 + +1.8 209,028 - -1.0 209,028 - -3.7 209,042 - -4.4 209,351 + PFR28_00187 0.23 -2.5 209,384 + PFR28_00187 0.26 -2.9 209,401 + PFR28_00187 0.27 -4.5 209,401 + PFR28_00187 0.27 -4.1 209,401 + PFR28_00187 0.27 +0.5 209,402 - PFR28_00187 0.27 -1.1 209,402 - PFR28_00187 0.27 -3.8 209,402 - PFR28_00187 0.27 -1.5 209,402 - PFR28_00187 0.27 -4.3 209,447 + PFR28_00187 0.30 -2.4 209,447 + PFR28_00187 0.30 -3.2 209,448 - PFR28_00187 0.30 -1.8 209,705 + PFR28_00187 0.50 -4.1 209,705 + PFR28_00187 0.50 -4.9 209,705 + PFR28_00187 0.50 -4.3 209,705 + PFR28_00187 0.50 -2.1 209,705 + PFR28_00187 0.50 -3.1 209,706 - PFR28_00187 0.50 -1.1 209,706 - PFR28_00187 0.50 -4.7 209,706 - PFR28_00187 0.50 -4.4 209,706 - PFR28_00187 0.50 -1.8 209,706 - PFR28_00187 0.50 -3.7 209,706 - PFR28_00187 0.50 -1.5 209,706 - PFR28_00187 0.50 -2.3 209,706 - PFR28_00187 0.50 -4.5 209,706 - PFR28_00187 0.50 +0.5 209,784 + PFR28_00187 0.55 -1.2 209,784 + PFR28_00187 0.55 -2.4 209,784 + PFR28_00187 0.55 -2.2 209,784 + PFR28_00187 0.55 -4.1 209,784 + PFR28_00187 0.55 -2.9 209,784 + PFR28_00187 0.55 -2.2 209,785 - PFR28_00187 0.56 -2.8 209,785 - PFR28_00187 0.56 -4.2 209,785 - PFR28_00187 0.56 -2.8 209,785 - PFR28_00187 0.56 -2.7 209,785 - PFR28_00187 0.56 -2.7
Or see this region's nucleotide sequence