Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF989 and GFF990 are separated by 86 nucleotides GFF990 and GFF991 are separated by 56 nucleotides GFF991 and GFF992 are separated by 69 nucleotides GFF992 and GFF993 are separated by 71 nucleotides GFF993 and GFF994 overlap by 4 nucleotides
GFF989 - Putative inner membrane protein, at 174,036 to 175,307
GFF989
GFF990 - FIG00637933: hypothetical protein, at 175,394 to 176,635
GFF990
GFF991 - hypothetical protein, at 176,692 to 176,835
GFF991
GFF992 - hypothetical protein, at 176,905 to 177,042
GFF992
GFF993 - Transposase STY4875, at 177,114 to 177,629
GFF993
GFF994 - hypothetical protein, at 177,626 to 177,739
GFF994
Position (kb) 175
176
177 Strain fitness (log2 ratio) -1
0
1 at 174.446 kb on - strand, within GFF989 at 174.452 kb on + strand, within GFF989 at 174.510 kb on - strand, within GFF989 at 174.511 kb on + strand, within GFF989 at 174.675 kb on + strand, within GFF989 at 174.675 kb on + strand, within GFF989 at 175.088 kb on + strand, within GFF989 at 175.088 kb on + strand, within GFF989 at 175.089 kb on - strand, within GFF989 at 175.395 kb on + strand at 175.442 kb on + strand at 175.734 kb on - strand, within GFF990 at 175.879 kb on + strand, within GFF990 at 175.880 kb on - strand, within GFF990 at 175.944 kb on + strand, within GFF990 at 176.203 kb on + strand, within GFF990 at 176.204 kb on - strand, within GFF990 at 176.515 kb on + strand at 176.751 kb on - strand, within GFF991 at 176.831 kb on - strand at 176.878 kb on - strand at 176.909 kb on + strand at 176.934 kb on + strand, within GFF992 at 176.934 kb on + strand, within GFF992 at 176.934 kb on + strand, within GFF992 at 177.076 kb on + strand at 177.076 kb on + strand at 177.271 kb on + strand, within GFF993 at 177.272 kb on - strand, within GFF993 at 177.276 kb on - strand, within GFF993 at 177.314 kb on + strand, within GFF993 at 177.318 kb on + strand, within GFF993 at 177.318 kb on + strand, within GFF993 at 177.324 kb on - strand, within GFF993 at 177.395 kb on + strand, within GFF993 at 177.419 kb on - strand, within GFF993
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 174,446 - GFF989 0.32 +0.0 174,452 + GFF989 0.33 +0.3 174,510 - GFF989 0.37 -0.1 174,511 + GFF989 0.37 -0.0 174,675 + GFF989 0.50 +0.1 174,675 + GFF989 0.50 +0.3 175,088 + GFF989 0.83 +0.2 175,088 + GFF989 0.83 +0.0 175,089 - GFF989 0.83 +0.1 175,395 + +0.0 175,442 + +0.5 175,734 - GFF990 0.27 -1.0 175,879 + GFF990 0.39 -0.5 175,880 - GFF990 0.39 -0.4 175,944 + GFF990 0.44 -0.3 176,203 + GFF990 0.65 +0.0 176,204 - GFF990 0.65 +0.1 176,515 + +0.2 176,751 - GFF991 0.41 +0.3 176,831 - +0.3 176,878 - -0.2 176,909 + -0.2 176,934 + GFF992 0.21 -0.1 176,934 + GFF992 0.21 -0.2 176,934 + GFF992 0.21 -1.1 177,076 + -0.1 177,076 + +0.6 177,271 + GFF993 0.30 -0.9 177,272 - GFF993 0.31 -1.7 177,276 - GFF993 0.31 -1.1 177,314 + GFF993 0.39 +0.5 177,318 + GFF993 0.40 -0.2 177,318 + GFF993 0.40 +0.3 177,324 - GFF993 0.41 +0.4 177,395 + GFF993 0.54 +0.9 177,419 - GFF993 0.59 +0.4
Or see this region's nucleotide sequence