Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF836 and GFF837 overlap by 4 nucleotides GFF837 and GFF838 are separated by 17 nucleotides GFF838 and GFF839 are separated by 9 nucleotides GFF839 and GFF840 are separated by 2 nucleotides
GFF836 - Putative potassium channel protein, at 18,922 to 19,992
GFF836
GFF837 - FIG00638518: hypothetical protein, at 19,989 to 20,648
GFF837
GFF838 - Membrane protein with DUF350 domain, at 20,666 to 21,064
GFF838
GFF839 - FIG00637977: hypothetical protein, at 21,074 to 21,712
GFF839
GFF840 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 21,715 to 22,878
GFF840
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2 at 19.725 kb on + strand, within GFF836 at 19.922 kb on + strand at 19.939 kb on - strand at 19.939 kb on - strand at 19.976 kb on + strand at 19.989 kb on - strand at 20.054 kb on - strand at 20.066 kb on + strand, within GFF837 at 20.171 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.206 kb on - strand, within GFF837 at 20.235 kb on - strand, within GFF837 at 20.288 kb on - strand, within GFF837 at 20.290 kb on - strand, within GFF837 at 20.424 kb on - strand, within GFF837 at 20.673 kb on + strand at 20.673 kb on + strand at 20.674 kb on - strand at 20.933 kb on + strand, within GFF838 at 20.944 kb on - strand, within GFF838 at 20.949 kb on + strand, within GFF838 at 20.951 kb on + strand, within GFF838 at 20.951 kb on + strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 20.952 kb on - strand, within GFF838 at 21.007 kb on + strand, within GFF838 at 21.368 kb on + strand, within GFF839 at 21.437 kb on - strand, within GFF839 at 21.465 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.515 kb on + strand, within GFF839 at 21.516 kb on - strand, within GFF839 at 21.516 kb on - strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.521 kb on + strand, within GFF839 at 21.522 kb on - strand, within GFF839 at 21.524 kb on - strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.542 kb on + strand, within GFF839 at 21.543 kb on - strand, within GFF839 at 21.543 kb on - strand, within GFF839 at 21.582 kb on - strand, within GFF839
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 19,725 + GFF836 0.75 -0.0 19,922 + +0.1 19,939 - -0.5 19,939 - -0.2 19,976 + +0.5 19,989 - +1.0 20,054 - +0.0 20,066 + GFF837 0.12 +0.3 20,171 - GFF837 0.28 +0.8 20,206 - GFF837 0.33 +0.1 20,206 - GFF837 0.33 -0.1 20,206 - GFF837 0.33 -0.2 20,235 - GFF837 0.37 +0.1 20,288 - GFF837 0.45 -0.2 20,290 - GFF837 0.46 +0.1 20,424 - GFF837 0.66 +0.1 20,673 + +0.2 20,673 + +0.2 20,674 - -0.7 20,933 + GFF838 0.67 -0.2 20,944 - GFF838 0.70 -0.0 20,949 + GFF838 0.71 +0.5 20,951 + GFF838 0.71 +0.7 20,951 + GFF838 0.71 +0.3 20,952 - GFF838 0.72 +0.0 20,952 - GFF838 0.72 -0.2 20,952 - GFF838 0.72 +1.8 21,007 + GFF838 0.85 -0.0 21,368 + GFF839 0.46 -0.7 21,437 - GFF839 0.57 +0.0 21,465 + GFF839 0.61 +0.1 21,515 + GFF839 0.69 -0.1 21,515 + GFF839 0.69 +0.1 21,515 + GFF839 0.69 -1.0 21,515 + GFF839 0.69 +0.5 21,516 - GFF839 0.69 -0.2 21,516 - GFF839 0.69 +0.2 21,521 + GFF839 0.70 +0.1 21,521 + GFF839 0.70 +0.2 21,521 + GFF839 0.70 +0.3 21,522 - GFF839 0.70 +0.4 21,524 - GFF839 0.70 +0.4 21,542 + GFF839 0.73 -0.1 21,542 + GFF839 0.73 -0.2 21,542 + GFF839 0.73 +0.8 21,543 - GFF839 0.73 -0.3 21,543 - GFF839 0.73 -0.3 21,582 - GFF839 0.79 +0.6
Or see this region's nucleotide sequence