Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF761

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF759 and GFF760 are separated by 9 nucleotidesGFF760 and GFF761 overlap by 4 nucleotidesGFF761 and GFF762 overlap by 17 nucleotidesGFF762 and GFF763 are separated by 42 nucleotides GFF759 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 116,649 to 117,782 GFF759 GFF760 - Putrescine transport system permease protein PotH (TC 3.A.1.11.2), at 117,792 to 118,745 GFF760 GFF761 - Putrescine transport system permease protein PotI (TC 3.A.1.11.2), at 118,742 to 119,587 GFF761 GFF762 - Putative inner membrane protein, at 119,571 to 120,134 GFF762 GFF763 - 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-), at 120,177 to 121,307 GFF763 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1at 117.778 kb on + strandat 117.778 kb on + strandat 117.780 kb on + strandat 117.901 kb on - strand, within GFF760at 118.235 kb on - strand, within GFF760at 118.354 kb on - strand, within GFF760at 118.355 kb on + strand, within GFF760at 118.369 kb on - strand, within GFF760at 118.391 kb on - strand, within GFF760at 118.401 kb on + strand, within GFF760at 118.593 kb on - strand, within GFF760at 118.668 kb on - strandat 118.670 kb on + strandat 118.670 kb on + strandat 118.671 kb on - strandat 118.671 kb on - strandat 118.687 kb on + strandat 118.688 kb on - strandat 118.710 kb on - strandat 118.747 kb on + strandat 118.748 kb on - strandat 118.802 kb on - strandat 118.895 kb on + strand, within GFF761at 119.230 kb on - strand, within GFF761at 119.671 kb on + strand, within GFF762at 119.792 kb on - strand, within GFF762at 119.915 kb on + strand, within GFF762at 119.916 kb on - strand, within GFF762at 119.935 kb on - strand, within GFF762at 119.951 kb on + strand, within GFF762at 120.076 kb on + strand, within GFF762at 120.132 kb on + strandat 120.139 kb on + strandat 120.140 kb on - strandat 120.176 kb on + strandat 120.176 kb on + strandat 120.177 kb on - strandat 120.271 kb on + strandat 120.372 kb on - strand, within GFF763at 120.513 kb on + strand, within GFF763at 120.514 kb on - strand, within GFF763at 120.514 kb on - strand, within GFF763at 120.516 kb on - strand, within GFF763

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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117,778 + -0.7
117,778 + +0.0
117,780 + -0.2
117,901 - GFF760 0.11 -0.3
118,235 - GFF760 0.46 +0.4
118,354 - GFF760 0.59 +0.3
118,355 + GFF760 0.59 +0.3
118,369 - GFF760 0.60 +0.7
118,391 - GFF760 0.63 -0.1
118,401 + GFF760 0.64 +0.1
118,593 - GFF760 0.84 +0.0
118,668 - +0.1
118,670 + -0.1
118,670 + -0.7
118,671 - -0.9
118,671 - -0.2
118,687 + +0.3
118,688 - +0.1
118,710 - -0.2
118,747 + +0.3
118,748 - -0.2
118,802 - +0.1
118,895 + GFF761 0.18 -0.0
119,230 - GFF761 0.58 -1.7
119,671 + GFF762 0.18 -0.3
119,792 - GFF762 0.39 +0.1
119,915 + GFF762 0.61 +0.5
119,916 - GFF762 0.61 -0.7
119,935 - GFF762 0.65 -0.4
119,951 + GFF762 0.67 +0.4
120,076 + GFF762 0.90 -0.3
120,132 + -0.1
120,139 + -0.2
120,140 - +0.8
120,176 + -0.2
120,176 + -2.9
120,177 - -0.2
120,271 + -0.4
120,372 - GFF763 0.17 -0.9
120,513 + GFF763 0.30 +0.3
120,514 - GFF763 0.30 -0.1
120,514 - GFF763 0.30 -0.1
120,516 - GFF763 0.30 -0.5

Or see this region's nucleotide sequence