Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF756 and GFF757 are separated by 96 nucleotides GFF757 and GFF758 are separated by 345 nucleotides GFF758 and GFF759 are separated by 87 nucleotides
GFF756 - Ribosomal protein S6 glutaminyl transferase, at 113,625 to 114,527
GFF756
GFF757 - putative sensory transduction regulator, at 114,624 to 115,100
GFF757
GFF758 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 115,446 to 116,561
GFF758
GFF759 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 116,649 to 117,782
GFF759
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 114.613 kb on - strand at 114.623 kb on + strand at 114.653 kb on + strand at 114.654 kb on - strand at 114.753 kb on + strand, within GFF757 at 114.937 kb on + strand, within GFF757 at 115.098 kb on + strand at 115.296 kb on + strand at 115.375 kb on - strand at 115.551 kb on + strand at 115.551 kb on + strand at 115.566 kb on + strand, within GFF758 at 115.567 kb on - strand, within GFF758 at 115.614 kb on - strand, within GFF758 at 115.623 kb on + strand, within GFF758 at 115.624 kb on - strand, within GFF758 at 115.624 kb on - strand, within GFF758 at 115.664 kb on - strand, within GFF758 at 115.833 kb on + strand, within GFF758 at 115.833 kb on + strand, within GFF758 at 115.833 kb on + strand, within GFF758 at 115.846 kb on - strand, within GFF758 at 115.847 kb on + strand, within GFF758 at 115.848 kb on - strand, within GFF758 at 115.874 kb on + strand, within GFF758 at 115.875 kb on - strand, within GFF758 at 116.099 kb on - strand, within GFF758 at 116.134 kb on - strand, within GFF758 at 116.337 kb on - strand, within GFF758 at 116.337 kb on - strand, within GFF758 at 116.389 kb on - strand, within GFF758 at 116.556 kb on - strand at 116.564 kb on + strand at 116.565 kb on - strand at 116.583 kb on + strand at 116.771 kb on + strand, within GFF759 at 116.775 kb on + strand, within GFF759 at 116.775 kb on + strand, within GFF759 at 116.776 kb on - strand, within GFF759 at 116.776 kb on - strand, within GFF759 at 116.930 kb on + strand, within GFF759 at 116.930 kb on + strand, within GFF759 at 117.084 kb on - strand, within GFF759 at 117.152 kb on + strand, within GFF759 at 117.152 kb on + strand, within GFF759 at 117.528 kb on + strand, within GFF759 at 117.528 kb on + strand, within GFF759 at 117.528 kb on + strand, within GFF759 at 117.529 kb on - strand, within GFF759 at 117.538 kb on + strand, within GFF759
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 114,613 - -0.9 114,623 + -0.4 114,653 + -0.6 114,654 - +0.3 114,753 + GFF757 0.27 +0.3 114,937 + GFF757 0.66 -0.6 115,098 + -0.0 115,296 + -0.7 115,375 - -0.0 115,551 + -0.0 115,551 + -0.1 115,566 + GFF758 0.11 -0.2 115,567 - GFF758 0.11 -1.0 115,614 - GFF758 0.15 -0.1 115,623 + GFF758 0.16 +0.0 115,624 - GFF758 0.16 -0.1 115,624 - GFF758 0.16 -0.0 115,664 - GFF758 0.20 +0.3 115,833 + GFF758 0.35 -0.3 115,833 + GFF758 0.35 +0.4 115,833 + GFF758 0.35 -1.3 115,846 - GFF758 0.36 -0.3 115,847 + GFF758 0.36 -0.1 115,848 - GFF758 0.36 +0.5 115,874 + GFF758 0.38 +0.1 115,875 - GFF758 0.38 +0.2 116,099 - GFF758 0.59 -0.3 116,134 - GFF758 0.62 -0.2 116,337 - GFF758 0.80 +0.0 116,337 - GFF758 0.80 -0.3 116,389 - GFF758 0.84 +0.0 116,556 - -0.4 116,564 + +0.5 116,565 - -0.2 116,583 + +0.3 116,771 + GFF759 0.11 +0.2 116,775 + GFF759 0.11 -0.1 116,775 + GFF759 0.11 +0.2 116,776 - GFF759 0.11 +1.3 116,776 - GFF759 0.11 -0.1 116,930 + GFF759 0.25 -0.4 116,930 + GFF759 0.25 +0.2 117,084 - GFF759 0.38 -0.1 117,152 + GFF759 0.44 -0.1 117,152 + GFF759 0.44 -0.0 117,528 + GFF759 0.78 +0.2 117,528 + GFF759 0.78 -2.9 117,528 + GFF759 0.78 -0.1 117,529 - GFF759 0.78 -0.2 117,538 + GFF759 0.78 -0.2
Or see this region's nucleotide sequence