Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF758

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF756 and GFF757 are separated by 96 nucleotidesGFF757 and GFF758 are separated by 345 nucleotidesGFF758 and GFF759 are separated by 87 nucleotides GFF756 - Ribosomal protein S6 glutaminyl transferase, at 113,625 to 114,527 GFF756 GFF757 - putative sensory transduction regulator, at 114,624 to 115,100 GFF757 GFF758 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 115,446 to 116,561 GFF758 GFF759 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 116,649 to 117,782 GFF759 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1at 114.613 kb on - strandat 114.623 kb on + strandat 114.653 kb on + strandat 114.654 kb on - strandat 114.753 kb on + strand, within GFF757at 114.937 kb on + strand, within GFF757at 115.098 kb on + strandat 115.296 kb on + strandat 115.375 kb on - strandat 115.551 kb on + strandat 115.551 kb on + strandat 115.566 kb on + strand, within GFF758at 115.567 kb on - strand, within GFF758at 115.614 kb on - strand, within GFF758at 115.623 kb on + strand, within GFF758at 115.624 kb on - strand, within GFF758at 115.624 kb on - strand, within GFF758at 115.664 kb on - strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.833 kb on + strand, within GFF758at 115.846 kb on - strand, within GFF758at 115.847 kb on + strand, within GFF758at 115.848 kb on - strand, within GFF758at 115.874 kb on + strand, within GFF758at 115.875 kb on - strand, within GFF758at 116.099 kb on - strand, within GFF758at 116.134 kb on - strand, within GFF758at 116.337 kb on - strand, within GFF758at 116.337 kb on - strand, within GFF758at 116.389 kb on - strand, within GFF758at 116.556 kb on - strandat 116.564 kb on + strandat 116.565 kb on - strandat 116.583 kb on + strandat 116.771 kb on + strand, within GFF759at 116.775 kb on + strand, within GFF759at 116.775 kb on + strand, within GFF759at 116.776 kb on - strand, within GFF759at 116.776 kb on - strand, within GFF759at 116.930 kb on + strand, within GFF759at 116.930 kb on + strand, within GFF759at 117.084 kb on - strand, within GFF759at 117.152 kb on + strand, within GFF759at 117.152 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.528 kb on + strand, within GFF759at 117.529 kb on - strand, within GFF759at 117.538 kb on + strand, within GFF759

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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114,613 - -0.9
114,623 + -0.4
114,653 + -0.6
114,654 - +0.3
114,753 + GFF757 0.27 +0.3
114,937 + GFF757 0.66 -0.6
115,098 + -0.0
115,296 + -0.7
115,375 - -0.0
115,551 + -0.0
115,551 + -0.1
115,566 + GFF758 0.11 -0.2
115,567 - GFF758 0.11 -1.0
115,614 - GFF758 0.15 -0.1
115,623 + GFF758 0.16 +0.0
115,624 - GFF758 0.16 -0.1
115,624 - GFF758 0.16 -0.0
115,664 - GFF758 0.20 +0.3
115,833 + GFF758 0.35 -0.3
115,833 + GFF758 0.35 +0.4
115,833 + GFF758 0.35 -1.3
115,846 - GFF758 0.36 -0.3
115,847 + GFF758 0.36 -0.1
115,848 - GFF758 0.36 +0.5
115,874 + GFF758 0.38 +0.1
115,875 - GFF758 0.38 +0.2
116,099 - GFF758 0.59 -0.3
116,134 - GFF758 0.62 -0.2
116,337 - GFF758 0.80 +0.0
116,337 - GFF758 0.80 -0.3
116,389 - GFF758 0.84 +0.0
116,556 - -0.4
116,564 + +0.5
116,565 - -0.2
116,583 + +0.3
116,771 + GFF759 0.11 +0.2
116,775 + GFF759 0.11 -0.1
116,775 + GFF759 0.11 +0.2
116,776 - GFF759 0.11 +1.3
116,776 - GFF759 0.11 -0.1
116,930 + GFF759 0.25 -0.4
116,930 + GFF759 0.25 +0.2
117,084 - GFF759 0.38 -0.1
117,152 + GFF759 0.44 -0.1
117,152 + GFF759 0.44 -0.0
117,528 + GFF759 0.78 +0.2
117,528 + GFF759 0.78 -2.9
117,528 + GFF759 0.78 -0.1
117,529 - GFF759 0.78 -0.2
117,538 + GFF759 0.78 -0.2

Or see this region's nucleotide sequence