Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF693 and GFF694 overlap by 8 nucleotides GFF694 and GFF695 overlap by 1 nucleotides GFF695 and GFF696 are separated by 229 nucleotides
GFF693 - ABC transporter multidrug efflux pump, fused ATP-binding domains, at 49,022 to 50,758
GFF693
GFF694 - Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG, at 50,751 to 51,746
GFF694
GFF695 - Transcriptional regulator YbiH, TetR family, at 51,746 to 52,420
GFF695
GFF696 - ATP-dependent RNA helicase RhlE, at 52,650 to 54,014
GFF696
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 51.013 kb on + strand, within GFF694 at 51.051 kb on + strand, within GFF694 at 51.457 kb on + strand, within GFF694 at 51.555 kb on - strand, within GFF694 at 51.641 kb on - strand, within GFF694 at 51.673 kb on + strand at 51.781 kb on + strand at 51.781 kb on + strand at 51.782 kb on - strand at 51.782 kb on - strand at 51.916 kb on + strand, within GFF695 at 51.935 kb on - strand, within GFF695 at 52.099 kb on + strand, within GFF695 at 52.248 kb on - strand, within GFF695 at 52.277 kb on - strand, within GFF695 at 52.415 kb on - strand at 52.645 kb on + strand at 52.649 kb on + strand at 52.649 kb on + strand at 52.650 kb on - strand at 52.682 kb on + strand at 52.721 kb on + strand at 52.722 kb on - strand at 52.947 kb on - strand, within GFF696 at 53.130 kb on - strand, within GFF696
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 51,013 + GFF694 0.26 +0.3 51,051 + GFF694 0.30 +0.3 51,457 + GFF694 0.71 -0.6 51,555 - GFF694 0.81 +0.7 51,641 - GFF694 0.89 -0.1 51,673 + +0.7 51,781 + -0.4 51,781 + -1.5 51,782 - +0.1 51,782 - -0.6 51,916 + GFF695 0.25 -1.0 51,935 - GFF695 0.28 -0.0 52,099 + GFF695 0.52 +0.4 52,248 - GFF695 0.74 -0.1 52,277 - GFF695 0.79 -0.5 52,415 - +0.2 52,645 + +0.1 52,649 + -2.4 52,649 + +1.0 52,650 - +0.5 52,682 + -0.2 52,721 + -0.0 52,722 - +0.2 52,947 - GFF696 0.22 +0.2 53,130 - GFF696 0.35 -0.5
Or see this region's nucleotide sequence