Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF629

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF628 and GFF629 are separated by 500 nucleotidesGFF629 and GFF630 are separated by 140 nucleotides GFF628 - Type IV pilus biogenesis protein PilQ, at 368,700 to 369,869 GFF628 GFF629 - Shikimate kinase I (EC 2.7.1.71), at 370,370 to 370,855 GFF629 GFF630 - 3-dehydroquinate synthase (EC 4.2.3.4), at 370,996 to 372,000 GFF630 Position (kb) 370 371Strain fitness (log2 ratio) -2 -1 0 1at 369.440 kb on - strand, within GFF628at 369.593 kb on + strand, within GFF628at 369.593 kb on + strand, within GFF628at 369.623 kb on - strand, within GFF628at 369.656 kb on + strand, within GFF628at 369.656 kb on + strand, within GFF628at 369.657 kb on - strand, within GFF628at 369.680 kb on - strand, within GFF628at 369.680 kb on - strand, within GFF628at 369.685 kb on + strand, within GFF628at 369.829 kb on + strandat 369.878 kb on + strandat 369.936 kb on + strandat 369.936 kb on + strandat 369.942 kb on - strandat 369.992 kb on + strandat 370.022 kb on + strandat 370.022 kb on + strandat 370.022 kb on + strandat 370.022 kb on + strandat 370.023 kb on - strandat 370.312 kb on + strandat 370.313 kb on - strandat 370.318 kb on + strandat 370.558 kb on + strand, within GFF629at 370.558 kb on + strand, within GFF629at 370.811 kb on - strandat 370.837 kb on + strandat 370.867 kb on + strandat 370.890 kb on + strandat 370.890 kb on + strandat 370.890 kb on + strandat 370.891 kb on - strandat 370.891 kb on - strandat 370.923 kb on + strandat 370.944 kb on + strandat 371.137 kb on - strand, within GFF630at 371.384 kb on - strand, within GFF630at 371.473 kb on + strand, within GFF630at 371.481 kb on + strand, within GFF630at 371.566 kb on - strand, within GFF630at 371.627 kb on + strand, within GFF630at 371.636 kb on + strand, within GFF630at 371.652 kb on + strand, within GFF630at 371.652 kb on + strand, within GFF630at 371.652 kb on + strand, within GFF630at 371.699 kb on + strand, within GFF630at 371.699 kb on + strand, within GFF630at 371.725 kb on - strand, within GFF630at 371.778 kb on + strand, within GFF630at 371.854 kb on + strand, within GFF630at 371.855 kb on - strand, within GFF630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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369,440 - GFF628 0.63 +0.2
369,593 + GFF628 0.76 +1.2
369,593 + GFF628 0.76 +0.7
369,623 - GFF628 0.79 +0.7
369,656 + GFF628 0.82 -0.2
369,656 + GFF628 0.82 -0.4
369,657 - GFF628 0.82 -0.5
369,680 - GFF628 0.84 +0.0
369,680 - GFF628 0.84 +0.1
369,685 + GFF628 0.84 -0.1
369,829 + +0.1
369,878 + +0.1
369,936 + +0.2
369,936 + +0.3
369,942 - +0.5
369,992 + +0.6
370,022 + +0.3
370,022 + -0.3
370,022 + +0.3
370,022 + -0.4
370,023 - +0.8
370,312 + +0.3
370,313 - -1.4
370,318 + -0.4
370,558 + GFF629 0.39 -1.1
370,558 + GFF629 0.39 -1.9
370,811 - -2.1
370,837 + +0.4
370,867 + -0.4
370,890 + +0.5
370,890 + +0.4
370,890 + +0.5
370,891 - -0.3
370,891 - -0.8
370,923 + -1.4
370,944 + -1.0
371,137 - GFF630 0.14 -2.1
371,384 - GFF630 0.39 +1.0
371,473 + GFF630 0.47 -0.4
371,481 + GFF630 0.48 -1.8
371,566 - GFF630 0.57 -1.2
371,627 + GFF630 0.63 -0.0
371,636 + GFF630 0.64 -0.8
371,652 + GFF630 0.65 -1.0
371,652 + GFF630 0.65 -1.6
371,652 + GFF630 0.65 -0.8
371,699 + GFF630 0.70 -0.7
371,699 + GFF630 0.70 +0.0
371,725 - GFF630 0.73 -2.1
371,778 + GFF630 0.78 +0.1
371,854 + GFF630 0.85 -0.3
371,855 - GFF630 0.85 -2.0

Or see this region's nucleotide sequence