Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4830

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4826 and GFF4827 overlap by 14 nucleotidesGFF4827 and GFF4828 overlap by 4 nucleotidesGFF4828 and GFF4829 overlap by 1 nucleotidesGFF4829 and GFF4830 are separated by 276 nucleotidesGFF4830 and GFF4831 are separated by 30 nucleotidesGFF4831 and GFF4832 are separated by 135 nucleotides GFF4826 - FIG01046316: hypothetical protein, at 125,441 to 125,572 GFF4826 GFF4827 - FIG01047314: hypothetical protein, at 125,559 to 125,744 GFF4827 GFF4828 - FIG01047314: hypothetical protein, at 125,741 to 125,887 GFF4828 GFF4829 - hypothetical protein, at 125,887 to 126,069 GFF4829 GFF4830 - hypothetical protein, at 126,346 to 126,492 GFF4830 GFF4831 - Queuosine Biosynthesis QueE Radical SAM, at 126,523 to 127,194 GFF4831 GFF4832 - Enolase (EC 4.2.1.11), at 127,330 to 128,628 GFF4832 Position (kb) 126 127Strain fitness (log2 ratio) -1 0 1at 125.441 kb on - strandat 125.594 kb on - strand, within GFF4827at 125.874 kb on - strandat 125.874 kb on - strandat 125.876 kb on - strandat 125.876 kb on - strandat 125.876 kb on - strandat 125.878 kb on - strandat 125.878 kb on - strandat 125.878 kb on - strandat 125.878 kb on - strandat 125.885 kb on + strandat 125.945 kb on + strand, within GFF4829at 126.124 kb on + strandat 126.240 kb on - strandat 126.469 kb on + strand, within GFF4830at 126.516 kb on + strandat 126.591 kb on + strand, within GFF4831at 126.610 kb on + strand, within GFF4831at 126.621 kb on + strand, within GFF4831at 126.813 kb on + strand, within GFF4831at 126.814 kb on - strand, within GFF4831at 126.856 kb on - strand, within GFF4831at 126.945 kb on - strand, within GFF4831at 127.075 kb on - strand, within GFF4831at 127.075 kb on - strand, within GFF4831at 127.078 kb on - strand, within GFF4831at 127.146 kb on - strandat 127.216 kb on - strandat 127.226 kb on + strandat 127.280 kb on - strandat 127.307 kb on + strandat 127.307 kb on + strandat 127.354 kb on - strandat 127.364 kb on + strandat 127.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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125,441 - +0.7
125,594 - GFF4827 0.19 -0.4
125,874 - -0.7
125,874 - -0.1
125,876 - -0.1
125,876 - +0.3
125,876 - -0.3
125,878 - -0.1
125,878 - +0.0
125,878 - +0.3
125,878 - +0.6
125,885 + -0.4
125,945 + GFF4829 0.32 -0.0
126,124 + +0.2
126,240 - -0.3
126,469 + GFF4830 0.84 -0.6
126,516 + -0.3
126,591 + GFF4831 0.10 -0.3
126,610 + GFF4831 0.13 -0.7
126,621 + GFF4831 0.15 +0.0
126,813 + GFF4831 0.43 +0.0
126,814 - GFF4831 0.43 -0.9
126,856 - GFF4831 0.50 +0.1
126,945 - GFF4831 0.63 -0.2
127,075 - GFF4831 0.82 +0.2
127,075 - GFF4831 0.82 +0.2
127,078 - GFF4831 0.83 -0.3
127,146 - -0.1
127,216 - +0.6
127,226 + -0.3
127,280 - -0.0
127,307 + -0.0
127,307 + +0.2
127,354 - -0.4
127,364 + +0.8
127,364 + -0.6

Or see this region's nucleotide sequence