Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4767 and GFF4768 are separated by 763 nucleotides GFF4768 and GFF4769 overlap by 1 nucleotides GFF4769 and GFF4770 are separated by 72 nucleotides GFF4770 and GFF4771 are separated by 411 nucleotides
GFF4767 - putative cytoplasmic protein, at 76,100 to 76,426
GFF4767
GFF4768 - FIG032766: hypothetical protein, at 77,190 to 77,405
GFF4768
GFF4769 - FIG001353: Acetyltransferase, at 77,405 to 77,929
GFF4769
GFF4770 - transposase, at 78,002 to 78,142
GFF4770
GFF4771 - Serine/threonine specific protein phosphatase 2 (EC 3.1.3.16), at 78,554 to 79,210
GFF4771
Position (kb)
77
78 Strain fitness (log2 ratio)
-2
-1
0
1 at 76.520 kb on - strand at 76.526 kb on + strand at 76.526 kb on + strand at 76.526 kb on + strand at 76.527 kb on - strand at 76.527 kb on - strand at 76.618 kb on - strand at 76.633 kb on - strand at 76.633 kb on - strand at 76.694 kb on - strand at 76.781 kb on + strand at 76.782 kb on - strand at 76.794 kb on + strand at 76.852 kb on + strand at 76.870 kb on - strand at 76.948 kb on - strand at 76.990 kb on + strand at 76.991 kb on - strand at 76.991 kb on - strand at 77.041 kb on - strand at 77.086 kb on - strand at 77.135 kb on - strand at 77.165 kb on - strand at 77.171 kb on - strand at 77.255 kb on - strand, within GFF4768 at 77.610 kb on + strand, within GFF4769 at 77.610 kb on + strand, within GFF4769 at 77.612 kb on + strand, within GFF4769 at 77.654 kb on + strand, within GFF4769 at 77.655 kb on - strand, within GFF4769 at 77.702 kb on - strand, within GFF4769 at 77.790 kb on + strand, within GFF4769 at 77.790 kb on + strand, within GFF4769 at 77.926 kb on - strand at 77.950 kb on + strand at 78.005 kb on + strand at 78.005 kb on + strand at 78.094 kb on - strand, within GFF4770 at 78.840 kb on + strand, within GFF4771 at 78.852 kb on - strand, within GFF4771
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 76,520 - -0.0 76,526 + +0.1 76,526 + -0.0 76,526 + +0.2 76,527 - -0.7 76,527 - +0.3 76,618 - +0.3 76,633 - -0.3 76,633 - +0.0 76,694 - +0.3 76,781 + +0.3 76,782 - +0.0 76,794 + -0.0 76,852 + +0.4 76,870 - -0.1 76,948 - -0.1 76,990 + +0.4 76,991 - -0.0 76,991 - -0.6 77,041 - -0.0 77,086 - +0.1 77,135 - -1.0 77,165 - -1.3 77,171 - -0.2 77,255 - GFF4768 0.30 -1.4 77,610 + GFF4769 0.39 +0.2 77,610 + GFF4769 0.39 +0.3 77,612 + GFF4769 0.39 +0.1 77,654 + GFF4769 0.47 +0.5 77,655 - GFF4769 0.48 +1.4 77,702 - GFF4769 0.57 +0.3 77,790 + GFF4769 0.73 -0.1 77,790 + GFF4769 0.73 -0.2 77,926 - -0.2 77,950 + +0.1 78,005 + -0.3 78,005 + -2.6 78,094 - GFF4770 0.65 +0.1 78,840 + GFF4771 0.44 -0.1 78,852 - GFF4771 0.45 -0.2
Or see this region's nucleotide sequence