Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4769

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4767 and GFF4768 are separated by 763 nucleotidesGFF4768 and GFF4769 overlap by 1 nucleotidesGFF4769 and GFF4770 are separated by 72 nucleotidesGFF4770 and GFF4771 are separated by 411 nucleotides GFF4767 - putative cytoplasmic protein, at 76,100 to 76,426 GFF4767 GFF4768 - FIG032766: hypothetical protein, at 77,190 to 77,405 GFF4768 GFF4769 - FIG001353: Acetyltransferase, at 77,405 to 77,929 GFF4769 GFF4770 - transposase, at 78,002 to 78,142 GFF4770 GFF4771 - Serine/threonine specific protein phosphatase 2 (EC 3.1.3.16), at 78,554 to 79,210 GFF4771 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1at 76.520 kb on - strandat 76.526 kb on + strandat 76.526 kb on + strandat 76.526 kb on + strandat 76.527 kb on - strandat 76.527 kb on - strandat 76.618 kb on - strandat 76.633 kb on - strandat 76.633 kb on - strandat 76.694 kb on - strandat 76.781 kb on + strandat 76.782 kb on - strandat 76.794 kb on + strandat 76.852 kb on + strandat 76.870 kb on - strandat 76.948 kb on - strandat 76.990 kb on + strandat 76.991 kb on - strandat 76.991 kb on - strandat 77.041 kb on - strandat 77.086 kb on - strandat 77.135 kb on - strandat 77.165 kb on - strandat 77.171 kb on - strandat 77.255 kb on - strand, within GFF4768at 77.610 kb on + strand, within GFF4769at 77.610 kb on + strand, within GFF4769at 77.612 kb on + strand, within GFF4769at 77.654 kb on + strand, within GFF4769at 77.655 kb on - strand, within GFF4769at 77.702 kb on - strand, within GFF4769at 77.790 kb on + strand, within GFF4769at 77.790 kb on + strand, within GFF4769at 77.926 kb on - strandat 77.950 kb on + strandat 78.005 kb on + strandat 78.005 kb on + strandat 78.094 kb on - strand, within GFF4770at 78.840 kb on + strand, within GFF4771at 78.852 kb on - strand, within GFF4771

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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76,520 - -0.0
76,526 + +0.1
76,526 + -0.0
76,526 + +0.2
76,527 - -0.7
76,527 - +0.3
76,618 - +0.3
76,633 - -0.3
76,633 - +0.0
76,694 - +0.3
76,781 + +0.3
76,782 - +0.0
76,794 + -0.0
76,852 + +0.4
76,870 - -0.1
76,948 - -0.1
76,990 + +0.4
76,991 - -0.0
76,991 - -0.6
77,041 - -0.0
77,086 - +0.1
77,135 - -1.0
77,165 - -1.3
77,171 - -0.2
77,255 - GFF4768 0.30 -1.4
77,610 + GFF4769 0.39 +0.2
77,610 + GFF4769 0.39 +0.3
77,612 + GFF4769 0.39 +0.1
77,654 + GFF4769 0.47 +0.5
77,655 - GFF4769 0.48 +1.4
77,702 - GFF4769 0.57 +0.3
77,790 + GFF4769 0.73 -0.1
77,790 + GFF4769 0.73 -0.2
77,926 - -0.2
77,950 + +0.1
78,005 + -0.3
78,005 + -2.6
78,094 - GFF4770 0.65 +0.1
78,840 + GFF4771 0.44 -0.1
78,852 - GFF4771 0.45 -0.2

Or see this region's nucleotide sequence