Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4741

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4740 and GFF4741 are separated by 429 nucleotides GFF4740 - MxiG protein; Pathogenicity 1 island effector protein, at 46,125 to 47,189 GFF4740 GFF4741 - Type III secretion transcriptional regulator HilD, at 47,619 to 48,548 GFF4741 Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1at 46.695 kb on - strand, within GFF4740at 46.695 kb on - strand, within GFF4740at 46.721 kb on - strand, within GFF4740at 47.007 kb on + strand, within GFF4740at 47.140 kb on - strandat 47.184 kb on + strandat 47.256 kb on + strandat 47.256 kb on + strandat 47.260 kb on + strandat 47.261 kb on - strandat 47.261 kb on - strandat 47.304 kb on - strandat 47.305 kb on + strandat 47.869 kb on + strand, within GFF4741at 47.953 kb on - strand, within GFF4741at 48.022 kb on - strand, within GFF4741at 48.053 kb on - strand, within GFF4741at 48.053 kb on - strand, within GFF4741at 48.111 kb on - strand, within GFF4741at 48.116 kb on + strand, within GFF4741at 48.219 kb on - strand, within GFF4741at 48.219 kb on - strand, within GFF4741at 48.238 kb on + strand, within GFF4741at 48.260 kb on + strand, within GFF4741at 48.314 kb on - strand, within GFF4741at 48.314 kb on - strand, within GFF4741at 48.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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46,695 - GFF4740 0.54 +0.1
46,695 - GFF4740 0.54 -0.4
46,721 - GFF4740 0.56 +0.7
47,007 + GFF4740 0.83 -1.0
47,140 - -0.8
47,184 + -3.7
47,256 + -3.1
47,256 + -1.8
47,260 + -2.8
47,261 - -0.1
47,261 - -0.7
47,304 - -0.9
47,305 + -2.6
47,869 + GFF4741 0.27 +0.1
47,953 - GFF4741 0.36 -1.4
48,022 - GFF4741 0.43 -0.7
48,053 - GFF4741 0.47 -0.4
48,053 - GFF4741 0.47 -0.6
48,111 - GFF4741 0.53 -0.3
48,116 + GFF4741 0.53 +0.0
48,219 - GFF4741 0.65 -0.0
48,219 - GFF4741 0.65 -0.7
48,238 + GFF4741 0.67 +0.7
48,260 + GFF4741 0.69 +0.5
48,314 - GFF4741 0.75 -0.6
48,314 - GFF4741 0.75 -0.1
48,865 + +0.1

Or see this region's nucleotide sequence