Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4640

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4639 and GFF4640 are separated by 14 nucleotidesGFF4640 and GFF4641 are separated by 141 nucleotides GFF4639 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 432,289 to 435,090 GFF4639 GFF4640 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 435,105 to 436,313 GFF4640 GFF4641 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 436,455 to 437,621 GFF4641 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1at 434.244 kb on + strand, within GFF4639at 434.565 kb on + strand, within GFF4639at 434.566 kb on - strand, within GFF4639at 435.030 kb on + strandat 435.882 kb on + strand, within GFF4640at 436.334 kb on + strandat 436.382 kb on - strandat 436.463 kb on - strandat 436.522 kb on - strandat 436.529 kb on + strandat 436.529 kb on + strandat 436.704 kb on + strand, within GFF4641at 437.064 kb on - strand, within GFF4641at 437.283 kb on - strand, within GFF4641

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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434,244 + GFF4639 0.70 -1.2
434,565 + GFF4639 0.81 -0.6
434,566 - GFF4639 0.81 -1.8
435,030 + -0.9
435,882 + GFF4640 0.64 -1.0
436,334 + +0.2
436,382 - +0.1
436,463 - -1.2
436,522 - +0.0
436,529 + -0.3
436,529 + -1.6
436,704 + GFF4641 0.21 -0.2
437,064 - GFF4641 0.52 -1.1
437,283 - GFF4641 0.71 -1.3

Or see this region's nucleotide sequence