Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4344

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4342 and GFF4343 are separated by 14 nucleotidesGFF4343 and GFF4344 overlap by 1 nucleotidesGFF4344 and GFF4345 overlap by 11 nucleotides GFF4342 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 123,566 to 124,453 GFF4342 GFF4343 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 124,468 to 124,797 GFF4343 GFF4344 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 124,797 to 125,411 GFF4344 GFF4345 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 125,401 to 127,392 GFF4345 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.823 kb on - strand, within GFF4342at 124.078 kb on - strand, within GFF4342at 124.078 kb on - strand, within GFF4342at 124.086 kb on + strand, within GFF4342at 124.194 kb on - strand, within GFF4342at 124.289 kb on - strand, within GFF4342at 124.289 kb on - strand, within GFF4342at 124.334 kb on - strand, within GFF4342at 124.336 kb on - strand, within GFF4342at 124.488 kb on - strandat 124.488 kb on - strandat 124.503 kb on + strand, within GFF4343at 124.504 kb on - strand, within GFF4343at 124.650 kb on + strand, within GFF4343at 124.732 kb on - strand, within GFF4343at 124.785 kb on + strandat 124.799 kb on - strandat 124.830 kb on + strandat 125.075 kb on + strand, within GFF4344at 125.118 kb on - strand, within GFF4344at 125.144 kb on + strand, within GFF4344at 125.272 kb on + strand, within GFF4344at 125.273 kb on - strand, within GFF4344at 125.277 kb on - strand, within GFF4344at 125.431 kb on - strandat 125.484 kb on - strandat 125.484 kb on - strandat 125.487 kb on - strandat 125.744 kb on + strand, within GFF4345at 125.978 kb on + strand, within GFF4345at 125.978 kb on + strand, within GFF4345at 125.979 kb on - strand, within GFF4345at 125.989 kb on - strand, within GFF4345at 126.081 kb on - strand, within GFF4345at 126.081 kb on - strand, within GFF4345at 126.081 kb on - strand, within GFF4345at 126.081 kb on - strand, within GFF4345at 126.088 kb on - strand, within GFF4345at 126.281 kb on + strand, within GFF4345

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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123,823 - GFF4342 0.29 -0.2
124,078 - GFF4342 0.58 -1.0
124,078 - GFF4342 0.58 -0.5
124,086 + GFF4342 0.59 -0.6
124,194 - GFF4342 0.71 +0.1
124,289 - GFF4342 0.81 -0.4
124,289 - GFF4342 0.81 -0.1
124,334 - GFF4342 0.86 +0.1
124,336 - GFF4342 0.87 +0.1
124,488 - +0.0
124,488 - -0.6
124,503 + GFF4343 0.11 -0.5
124,504 - GFF4343 0.11 -0.2
124,650 + GFF4343 0.55 -0.8
124,732 - GFF4343 0.80 -0.6
124,785 + -0.7
124,799 - -0.3
124,830 + +0.4
125,075 + GFF4344 0.45 -0.2
125,118 - GFF4344 0.52 -0.6
125,144 + GFF4344 0.56 -0.3
125,272 + GFF4344 0.77 -0.6
125,273 - GFF4344 0.77 -1.0
125,277 - GFF4344 0.78 -0.4
125,431 - -0.2
125,484 - -0.6
125,484 - +0.1
125,487 - -0.6
125,744 + GFF4345 0.17 -0.6
125,978 + GFF4345 0.29 -1.9
125,978 + GFF4345 0.29 -0.1
125,979 - GFF4345 0.29 -1.0
125,989 - GFF4345 0.30 -0.2
126,081 - GFF4345 0.34 -0.2
126,081 - GFF4345 0.34 -1.7
126,081 - GFF4345 0.34 +1.4
126,081 - GFF4345 0.34 +0.4
126,088 - GFF4345 0.34 -0.6
126,281 + GFF4345 0.44 -0.2

Or see this region's nucleotide sequence