Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4259 and GFF4260 are separated by 231 nucleotides GFF4260 and GFF4261 are separated by 135 nucleotides GFF4261 and GFF4262 are separated by 61 nucleotides GFF4262 and GFF4263 are separated by 29 nucleotides
GFF4259 - Threonine efflux protein, at 45,024 to 45,656
GFF4259
GFF4260 - FIG00639237: hypothetical protein, at 45,888 to 46,163
GFF4260
GFF4261 - Propionate catabolism operon regulatory protein PrpR, at 46,299 to 47,924
GFF4261
GFF4262 - FIG01048137: hypothetical protein, at 47,986 to 48,159
GFF4262
GFF4263 - Methylisocitrate lyase (EC 4.1.3.30), at 48,189 to 49,076
GFF4263
Position (kb) 46
47
48 Strain fitness (log2 ratio) -1
0
1 at 45.405 kb on + strand, within GFF4259 at 45.406 kb on - strand, within GFF4259 at 45.409 kb on + strand, within GFF4259 at 45.409 kb on + strand, within GFF4259 at 45.686 kb on - strand at 45.700 kb on + strand at 45.703 kb on + strand at 45.805 kb on + strand at 45.806 kb on - strand at 45.848 kb on + strand at 45.908 kb on + strand at 45.945 kb on + strand, within GFF4260 at 45.996 kb on + strand, within GFF4260 at 46.301 kb on - strand at 46.410 kb on + strand at 46.410 kb on + strand at 46.470 kb on - strand, within GFF4261 at 46.480 kb on - strand, within GFF4261 at 46.483 kb on - strand, within GFF4261 at 46.575 kb on - strand, within GFF4261 at 46.748 kb on + strand, within GFF4261 at 46.759 kb on + strand, within GFF4261 at 47.100 kb on - strand, within GFF4261 at 47.213 kb on - strand, within GFF4261 at 47.220 kb on - strand, within GFF4261 at 47.264 kb on + strand, within GFF4261 at 47.289 kb on + strand, within GFF4261 at 47.390 kb on + strand, within GFF4261 at 47.512 kb on + strand, within GFF4261 at 47.512 kb on + strand, within GFF4261 at 47.512 kb on + strand, within GFF4261 at 47.582 kb on - strand, within GFF4261 at 47.634 kb on + strand, within GFF4261 at 47.637 kb on + strand, within GFF4261 at 48.315 kb on + strand, within GFF4263 at 48.316 kb on - strand, within GFF4263 at 48.474 kb on - strand, within GFF4263 at 48.474 kb on - strand, within GFF4263 at 48.601 kb on + strand, within GFF4263 at 48.717 kb on + strand, within GFF4263
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 45,405 + GFF4259 0.60 -0.1 45,406 - GFF4259 0.60 -1.1 45,409 + GFF4259 0.61 -0.2 45,409 + GFF4259 0.61 +1.0 45,686 - +0.5 45,700 + -0.3 45,703 + -0.4 45,805 + +0.0 45,806 - -0.0 45,848 + +0.2 45,908 + +0.5 45,945 + GFF4260 0.21 +0.2 45,996 + GFF4260 0.39 -0.3 46,301 - +0.1 46,410 + -0.1 46,410 + -0.9 46,470 - GFF4261 0.11 -0.5 46,480 - GFF4261 0.11 -0.8 46,483 - GFF4261 0.11 -1.0 46,575 - GFF4261 0.17 +0.1 46,748 + GFF4261 0.28 +0.3 46,759 + GFF4261 0.28 +0.0 47,100 - GFF4261 0.49 -0.2 47,213 - GFF4261 0.56 -0.1 47,220 - GFF4261 0.57 -0.1 47,264 + GFF4261 0.59 -0.2 47,289 + GFF4261 0.61 +0.3 47,390 + GFF4261 0.67 +0.1 47,512 + GFF4261 0.75 -1.0 47,512 + GFF4261 0.75 -0.3 47,512 + GFF4261 0.75 -0.6 47,582 - GFF4261 0.79 -0.3 47,634 + GFF4261 0.82 -0.5 47,637 + GFF4261 0.82 -0.2 48,315 + GFF4263 0.14 -0.5 48,316 - GFF4263 0.14 +0.7 48,474 - GFF4263 0.32 -0.6 48,474 - GFF4263 0.32 +0.6 48,601 + GFF4263 0.46 -0.4 48,717 + GFF4263 0.59 +0.3
Or see this region's nucleotide sequence