Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4245 and GFF4246 are separated by 16 nucleotides GFF4246 and GFF4247 overlap by 4 nucleotides
GFF4245 - RND efflux system, outer membrane lipoprotein CmeC, at 22,631 to 24,088
GFF4245
GFF4246 - RND efflux system, inner membrane transporter CmeB, at 24,105 to 27,272
GFF4246
GFF4247 - RND efflux system, membrane fusion protein CmeA, at 27,269 to 28,495
GFF4247
Position (kb) 24
25
26
27
28 Strain fitness (log2 ratio) -1
0
1
2 at 23.220 kb on - strand, within GFF4245 at 23.258 kb on - strand, within GFF4245 at 23.460 kb on + strand, within GFF4245 at 23.460 kb on + strand, within GFF4245 at 23.461 kb on - strand, within GFF4245 at 23.577 kb on + strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.598 kb on + strand, within GFF4245 at 23.599 kb on - strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.838 kb on - strand, within GFF4245 at 23.838 kb on - strand, within GFF4245 at 23.879 kb on + strand, within GFF4245 at 23.962 kb on - strand at 24.089 kb on + strand at 24.106 kb on + strand at 24.106 kb on + strand at 24.280 kb on - strand at 24.289 kb on - strand at 24.292 kb on - strand at 24.292 kb on - strand at 24.473 kb on + strand, within GFF4246 at 24.474 kb on - strand, within GFF4246 at 24.528 kb on - strand, within GFF4246 at 24.528 kb on - strand, within GFF4246 at 24.572 kb on - strand, within GFF4246 at 24.775 kb on - strand, within GFF4246 at 24.793 kb on + strand, within GFF4246 at 24.976 kb on + strand, within GFF4246 at 25.069 kb on - strand, within GFF4246 at 25.140 kb on - strand, within GFF4246 at 25.205 kb on + strand, within GFF4246 at 25.389 kb on + strand, within GFF4246 at 25.535 kb on - strand, within GFF4246 at 25.537 kb on + strand, within GFF4246 at 25.537 kb on + strand, within GFF4246 at 25.538 kb on - strand, within GFF4246 at 25.542 kb on - strand, within GFF4246 at 25.612 kb on + strand, within GFF4246 at 25.612 kb on + strand, within GFF4246 at 25.613 kb on - strand, within GFF4246 at 25.937 kb on + strand, within GFF4246 at 26.057 kb on + strand, within GFF4246 at 26.057 kb on + strand, within GFF4246 at 26.058 kb on - strand, within GFF4246 at 26.058 kb on - strand, within GFF4246 at 26.240 kb on + strand, within GFF4246 at 26.427 kb on + strand, within GFF4246 at 26.439 kb on + strand, within GFF4246 at 26.441 kb on + strand, within GFF4246 at 26.443 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.801 kb on + strand, within GFF4246 at 26.810 kb on - strand, within GFF4246 at 27.036 kb on - strand at 27.036 kb on - strand at 27.037 kb on + strand at 27.484 kb on - strand, within GFF4247 at 27.519 kb on + strand, within GFF4247 at 27.705 kb on - strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.829 kb on - strand, within GFF4247 at 27.851 kb on - strand, within GFF4247 at 27.914 kb on + strand, within GFF4247 at 27.950 kb on - strand, within GFF4247 at 28.125 kb on - strand, within GFF4247 at 28.139 kb on + strand, within GFF4247 at 28.140 kb on - strand, within GFF4247
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 23,220 - GFF4245 0.40 +0.3 23,258 - GFF4245 0.43 +0.7 23,460 + GFF4245 0.57 +1.9 23,460 + GFF4245 0.57 +0.2 23,461 - GFF4245 0.57 +0.4 23,577 + GFF4245 0.65 +0.2 23,578 - GFF4245 0.65 +0.5 23,578 - GFF4245 0.65 +0.9 23,578 - GFF4245 0.65 +0.2 23,598 + GFF4245 0.66 +0.3 23,599 - GFF4245 0.66 +0.3 23,837 + GFF4245 0.83 -0.6 23,837 + GFF4245 0.83 -0.4 23,837 + GFF4245 0.83 +1.5 23,838 - GFF4245 0.83 +0.6 23,838 - GFF4245 0.83 +0.0 23,879 + GFF4245 0.86 -0.5 23,962 - +0.6 24,089 + +0.0 24,106 + +0.4 24,106 + +0.0 24,280 - +0.0 24,289 - -0.0 24,292 - +0.2 24,292 - +1.0 24,473 + GFF4246 0.12 +0.4 24,474 - GFF4246 0.12 +0.4 24,528 - GFF4246 0.13 -0.5 24,528 - GFF4246 0.13 +0.0 24,572 - GFF4246 0.15 -0.4 24,775 - GFF4246 0.21 -0.0 24,793 + GFF4246 0.22 -0.9 24,976 + GFF4246 0.27 +0.1 25,069 - GFF4246 0.30 +1.7 25,140 - GFF4246 0.33 +0.6 25,205 + GFF4246 0.35 -0.0 25,389 + GFF4246 0.41 -0.3 25,535 - GFF4246 0.45 -0.4 25,537 + GFF4246 0.45 -1.3 25,537 + GFF4246 0.45 -0.3 25,538 - GFF4246 0.45 +0.2 25,542 - GFF4246 0.45 +0.5 25,612 + GFF4246 0.48 -0.1 25,612 + GFF4246 0.48 -0.4 25,613 - GFF4246 0.48 -0.2 25,937 + GFF4246 0.58 -0.1 26,057 + GFF4246 0.62 +0.8 26,057 + GFF4246 0.62 +0.5 26,058 - GFF4246 0.62 -0.5 26,058 - GFF4246 0.62 -0.4 26,240 + GFF4246 0.67 -0.5 26,427 + GFF4246 0.73 +0.2 26,439 + GFF4246 0.74 -0.6 26,441 + GFF4246 0.74 +0.0 26,443 + GFF4246 0.74 -0.3 26,628 + GFF4246 0.80 -0.4 26,628 + GFF4246 0.80 -0.4 26,628 + GFF4246 0.80 -0.2 26,628 + GFF4246 0.80 -0.7 26,801 + GFF4246 0.85 -0.3 26,810 - GFF4246 0.85 +0.3 27,036 - -0.2 27,036 - +0.6 27,037 + -0.1 27,484 - GFF4247 0.18 -0.2 27,519 + GFF4247 0.20 -0.1 27,705 - GFF4247 0.36 -0.3 27,828 + GFF4247 0.46 -0.1 27,828 + GFF4247 0.46 -0.4 27,828 + GFF4247 0.46 +0.0 27,828 + GFF4247 0.46 -0.1 27,829 - GFF4247 0.46 -0.9 27,851 - GFF4247 0.47 +0.2 27,914 + GFF4247 0.53 -0.1 27,950 - GFF4247 0.56 -1.2 28,125 - GFF4247 0.70 -0.6 28,139 + GFF4247 0.71 -0.0 28,140 - GFF4247 0.71 -0.1
Or see this region's nucleotide sequence