Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4160

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4158 and GFF4159 are separated by 236 nucleotidesGFF4159 and GFF4160 are separated by 4 nucleotidesGFF4160 and GFF4161 are separated by 165 nucleotidesGFF4161 and GFF4162 are separated by 148 nucleotides GFF4158 - tmRNA-binding protein SmpB, at 50,531 to 51,013 GFF4158 GFF4159 - Putative oligoketide cyclase/lipid transport protein, similarity with yeast ubiquinone-binding protein YOL008W, at 51,250 to 51,639 GFF4159 GFF4160 - UPF0125 protein yfjF, at 51,644 to 51,919 GFF4160 GFF4161 - Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex, at 52,085 to 52,423 GFF4161 GFF4162 - DNA repair protein RecN, at 52,572 to 54,233 GFF4162 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1at 50.851 kb on - strand, within GFF4158at 50.943 kb on + strand, within GFF4158at 51.035 kb on - strandat 51.085 kb on - strandat 51.089 kb on + strandat 51.090 kb on - strandat 51.090 kb on - strandat 51.119 kb on - strandat 51.161 kb on - strandat 51.171 kb on - strandat 51.260 kb on + strandat 51.680 kb on + strand, within GFF4160at 51.781 kb on + strand, within GFF4160at 51.786 kb on + strand, within GFF4160at 51.787 kb on - strand, within GFF4160at 51.794 kb on + strand, within GFF4160at 51.882 kb on + strand, within GFF4160at 51.883 kb on - strand, within GFF4160at 51.883 kb on - strand, within GFF4160at 51.913 kb on + strandat 52.060 kb on - strandat 52.087 kb on - strandat 52.200 kb on + strand, within GFF4161at 52.201 kb on - strand, within GFF4161at 52.216 kb on + strand, within GFF4161at 52.304 kb on - strand, within GFF4161at 52.304 kb on - strand, within GFF4161at 52.304 kb on - strand, within GFF4161at 52.310 kb on - strand, within GFF4161at 52.314 kb on + strand, within GFF4161at 52.314 kb on + strand, within GFF4161at 52.314 kb on + strand, within GFF4161at 52.467 kb on - strandat 52.470 kb on - strandat 52.470 kb on - strandat 52.470 kb on - strandat 52.473 kb on - strandat 52.487 kb on - strandat 52.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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50,851 - GFF4158 0.66 -0.6
50,943 + GFF4158 0.85 -0.5
51,035 - +0.4
51,085 - +0.1
51,089 + +0.3
51,090 - +0.1
51,090 - +0.1
51,119 - +0.2
51,161 - +0.5
51,171 - -0.8
51,260 + -3.3
51,680 + GFF4160 0.13 -1.2
51,781 + GFF4160 0.50 -1.0
51,786 + GFF4160 0.51 -0.3
51,787 - GFF4160 0.52 -0.8
51,794 + GFF4160 0.54 +0.7
51,882 + GFF4160 0.86 -1.7
51,883 - GFF4160 0.87 +0.0
51,883 - GFF4160 0.87 -0.3
51,913 + -0.8
52,060 - +0.3
52,087 - +0.1
52,200 + GFF4161 0.34 +0.2
52,201 - GFF4161 0.34 +0.7
52,216 + GFF4161 0.39 +0.1
52,304 - GFF4161 0.65 +0.1
52,304 - GFF4161 0.65 +1.0
52,304 - GFF4161 0.65 -0.9
52,310 - GFF4161 0.66 +0.6
52,314 + GFF4161 0.68 +0.8
52,314 + GFF4161 0.68 +0.2
52,314 + GFF4161 0.68 +0.1
52,467 - +0.3
52,470 - +0.5
52,470 - +0.3
52,470 - +0.0
52,473 - +0.3
52,487 - +0.2
52,504 - -0.0

Or see this region's nucleotide sequence