Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4150

Experiment: LB_plus_SM_buffer

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4149 and GFF4150 are separated by 443 nucleotidesGFF4150 and GFF4151 are separated by 1 nucleotidesGFF4151 and GFF4152 are separated by 13 nucleotides GFF4149 - putative cytoplasmic protein, at 29,552 to 30,691 GFF4149 GFF4150 - putative periplasmic protein, at 31,135 to 31,773 GFF4150 GFF4151 - integrase-like protein, at 31,775 to 31,942 GFF4151 GFF4152 - Phage integrase, Phage P4-associated, at 31,956 to 33,020 GFF4152 Position (kb) 31 32Strain fitness (log2 ratio) -1 0 1at 30.414 kb on - strand, within GFF4149at 30.460 kb on + strand, within GFF4149at 30.532 kb on - strand, within GFF4149at 30.532 kb on - strand, within GFF4149at 30.632 kb on - strandat 30.632 kb on - strandat 30.740 kb on + strandat 30.771 kb on - strandat 30.785 kb on - strandat 30.952 kb on - strandat 30.952 kb on - strandat 30.990 kb on + strandat 30.991 kb on - strandat 31.043 kb on + strandat 31.043 kb on + strandat 31.072 kb on - strandat 31.238 kb on - strand, within GFF4150at 31.238 kb on - strand, within GFF4150at 31.477 kb on - strand, within GFF4150at 31.515 kb on + strand, within GFF4150at 31.550 kb on + strand, within GFF4150at 31.627 kb on - strand, within GFF4150at 31.631 kb on + strand, within GFF4150at 31.729 kb on - strandat 32.069 kb on + strand, within GFF4152at 32.069 kb on + strand, within GFF4152at 32.069 kb on + strand, within GFF4152at 32.287 kb on - strand, within GFF4152at 32.481 kb on - strand, within GFF4152at 32.736 kb on + strand, within GFF4152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
remove
30,414 - GFF4149 0.76 +0.4
30,460 + GFF4149 0.80 -1.1
30,532 - GFF4149 0.86 +0.1
30,532 - GFF4149 0.86 +0.2
30,632 - +0.0
30,632 - +0.3
30,740 + +0.6
30,771 - -0.3
30,785 - +0.1
30,952 - +0.3
30,952 - -0.2
30,990 + -0.4
30,991 - +0.5
31,043 + +0.6
31,043 + +0.1
31,072 - +0.9
31,238 - GFF4150 0.16 +0.5
31,238 - GFF4150 0.16 +0.3
31,477 - GFF4150 0.54 -0.2
31,515 + GFF4150 0.59 +0.5
31,550 + GFF4150 0.65 +0.7
31,627 - GFF4150 0.77 +0.0
31,631 + GFF4150 0.78 +0.5
31,729 - -1.1
32,069 + GFF4152 0.11 +0.8
32,069 + GFF4152 0.11 -0.5
32,069 + GFF4152 0.11 +0.0
32,287 - GFF4152 0.31 +0.1
32,481 - GFF4152 0.49 +0.8
32,736 + GFF4152 0.73 -0.1

Or see this region's nucleotide sequence