Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4033 and GFF3972 are separated by 877 nucleotides GFF3972 and GFF3973 overlap by 12 nucleotides GFF3973 and GFF3974 are separated by 84 nucleotides
GFF4033 - tRNA-Asn-GTT, at 250,617 to 250,692
GFF4033
GFF3972 - Putative acyl carrier protein, at 251,570 to 251,896
GFF3972
GFF3973 - FIG01046826: hypothetical protein, at 251,885 to 252,007
GFF3973
GFF3974 - AMP nucleosidase (EC 3.2.2.4), at 252,092 to 253,546
GFF3974
Position (kb) 251
252 Strain fitness (log2 ratio) -1
0
1 at 250.857 kb on + strand at 250.857 kb on + strand at 250.857 kb on + strand at 250.914 kb on + strand at 250.915 kb on - strand at 250.915 kb on - strand at 250.916 kb on + strand at 250.917 kb on - strand at 251.132 kb on + strand at 251.143 kb on + strand at 251.149 kb on + strand at 251.149 kb on + strand at 251.277 kb on - strand at 251.432 kb on + strand at 251.515 kb on + strand at 251.521 kb on - strand at 251.530 kb on + strand at 251.538 kb on + strand at 251.544 kb on - strand at 251.564 kb on + strand at 251.565 kb on - strand at 251.677 kb on + strand, within GFF3972 at 251.678 kb on - strand, within GFF3972 at 251.722 kb on + strand, within GFF3972 at 251.766 kb on + strand, within GFF3972 at 251.888 kb on + strand at 251.889 kb on - strand at 252.046 kb on + strand at 252.088 kb on + strand at 252.341 kb on - strand, within GFF3974 at 252.366 kb on + strand, within GFF3974 at 252.424 kb on + strand, within GFF3974 at 252.425 kb on - strand, within GFF3974 at 252.465 kb on - strand, within GFF3974 at 252.503 kb on - strand, within GFF3974 at 252.503 kb on - strand, within GFF3974 at 252.774 kb on - strand, within GFF3974
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 250,857 + -0.1 250,857 + +0.4 250,857 + -0.2 250,914 + +0.0 250,915 - -1.2 250,915 - -0.3 250,916 + +0.2 250,917 - +0.3 251,132 + +0.5 251,143 + -0.4 251,149 + -1.5 251,149 + -0.4 251,277 - -0.4 251,432 + +0.2 251,515 + +1.4 251,521 - +0.5 251,530 + -0.9 251,538 + +0.1 251,544 - -0.2 251,564 + -0.0 251,565 - +0.6 251,677 + GFF3972 0.33 -0.0 251,678 - GFF3972 0.33 -0.1 251,722 + GFF3972 0.46 -0.4 251,766 + GFF3972 0.60 -1.2 251,888 + -0.3 251,889 - -0.1 252,046 + +0.4 252,088 + +0.2 252,341 - GFF3974 0.17 -0.4 252,366 + GFF3974 0.19 +0.0 252,424 + GFF3974 0.23 +0.4 252,425 - GFF3974 0.23 -0.0 252,465 - GFF3974 0.26 +0.2 252,503 - GFF3974 0.28 +0.1 252,503 - GFF3974 0.28 +0.2 252,774 - GFF3974 0.47 +0.6
Or see this region's nucleotide sequence