Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3697

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3696 and GFF3697 overlap by 4 nucleotides GFF3696 - Integrase, at 49,828 to 51,168 GFF3696 GFF3697 - Phage excisionase, at 51,165 to 51,413 GFF3697 Position (kb) 51 52Strain fitness (log2 ratio) -1 0 1at 50.288 kb on + strand, within GFF3696at 50.288 kb on + strand, within GFF3696at 50.290 kb on + strand, within GFF3696at 50.290 kb on + strand, within GFF3696at 50.291 kb on - strand, within GFF3696at 50.304 kb on + strand, within GFF3696at 50.389 kb on - strand, within GFF3696at 50.436 kb on - strand, within GFF3696at 50.436 kb on - strand, within GFF3696at 50.627 kb on + strand, within GFF3696at 50.627 kb on + strand, within GFF3696at 50.628 kb on - strand, within GFF3696at 50.628 kb on - strand, within GFF3696at 50.720 kb on + strand, within GFF3696at 50.720 kb on + strand, within GFF3696at 50.721 kb on - strand, within GFF3696at 50.805 kb on + strand, within GFF3696at 50.806 kb on - strand, within GFF3696at 50.940 kb on + strand, within GFF3696at 51.046 kb on - strandat 51.046 kb on - strandat 51.052 kb on - strandat 51.053 kb on + strandat 51.054 kb on - strandat 51.235 kb on + strand, within GFF3697at 51.235 kb on + strand, within GFF3697at 51.238 kb on - strand, within GFF3697at 51.238 kb on - strand, within GFF3697at 51.238 kb on - strand, within GFF3697at 51.287 kb on - strand, within GFF3697

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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50,288 + GFF3696 0.34 -0.1
50,288 + GFF3696 0.34 -0.3
50,290 + GFF3696 0.34 +0.2
50,290 + GFF3696 0.34 +0.4
50,291 - GFF3696 0.35 +0.3
50,304 + GFF3696 0.35 +0.2
50,389 - GFF3696 0.42 +0.8
50,436 - GFF3696 0.45 +0.7
50,436 - GFF3696 0.45 +1.0
50,627 + GFF3696 0.60 +0.1
50,627 + GFF3696 0.60 -0.0
50,628 - GFF3696 0.60 +0.9
50,628 - GFF3696 0.60 +0.6
50,720 + GFF3696 0.67 -0.3
50,720 + GFF3696 0.67 -0.1
50,721 - GFF3696 0.67 +0.0
50,805 + GFF3696 0.73 -0.0
50,806 - GFF3696 0.73 +0.1
50,940 + GFF3696 0.83 -0.2
51,046 - -0.6
51,046 - -0.1
51,052 - +0.7
51,053 + +0.1
51,054 - -1.0
51,235 + GFF3697 0.28 +1.3
51,235 + GFF3697 0.28 +0.4
51,238 - GFF3697 0.29 +0.1
51,238 - GFF3697 0.29 -0.1
51,238 - GFF3697 0.29 -0.0
51,287 - GFF3697 0.49 +0.2

Or see this region's nucleotide sequence