Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3641 and GFF3642 overlap by 1 nucleotides GFF3642 and GFF3643 are separated by 2 nucleotides GFF3643 and GFF3644 are separated by 3 nucleotides
GFF3641 - Endonuclease III (EC 4.2.99.18), at 390,610 to 391,245
GFF3641
GFF3642 - Electron transport complex protein RnfE, at 391,245 to 391,937
GFF3642
GFF3643 - Electron transport complex protein RnfG, at 391,940 to 392,560
GFF3643
GFF3644 - Electron transport complex protein RnfD, at 392,564 to 393,622
GFF3644
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.976 kb on - strand, within GFF3641 at 390.993 kb on + strand, within GFF3641 at 390.994 kb on - strand, within GFF3641 at 391.776 kb on - strand, within GFF3642 at 391.792 kb on - strand, within GFF3642 at 392.164 kb on + strand, within GFF3643 at 392.165 kb on - strand, within GFF3643 at 392.172 kb on - strand, within GFF3643 at 392.262 kb on + strand, within GFF3643 at 392.371 kb on - strand, within GFF3643 at 392.397 kb on + strand, within GFF3643 at 392.503 kb on + strand at 392.533 kb on + strand at 392.583 kb on + strand at 392.601 kb on + strand at 392.602 kb on - strand at 392.693 kb on + strand, within GFF3644 at 392.992 kb on - strand, within GFF3644 at 393.046 kb on + strand, within GFF3644 at 393.227 kb on + strand, within GFF3644 at 393.227 kb on + strand, within GFF3644 at 393.288 kb on - strand, within GFF3644 at 393.469 kb on + strand, within GFF3644
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 390,976 - GFF3641 0.58 +0.1 390,993 + GFF3641 0.60 +0.1 390,994 - GFF3641 0.60 +0.3 391,776 - GFF3642 0.77 -0.9 391,792 - GFF3642 0.79 -0.9 392,164 + GFF3643 0.36 -0.9 392,165 - GFF3643 0.36 -0.5 392,172 - GFF3643 0.37 -0.9 392,262 + GFF3643 0.52 -1.2 392,371 - GFF3643 0.69 -0.7 392,397 + GFF3643 0.74 -0.4 392,503 + -1.1 392,533 + -0.9 392,583 + -0.3 392,601 + +0.2 392,602 - -0.6 392,693 + GFF3644 0.12 -3.0 392,992 - GFF3644 0.40 -0.9 393,046 + GFF3644 0.46 -0.6 393,227 + GFF3644 0.63 +0.1 393,227 + GFF3644 0.63 -1.5 393,288 - GFF3644 0.68 -1.0 393,469 + GFF3644 0.85 +0.1
Or see this region's nucleotide sequence