Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF345 and GFF346 are separated by 677 nucleotides GFF346 and GFF347 are separated by 81 nucleotides GFF347 and GFF637 are separated by 113 nucleotides GFF637 and GFF348 are separated by 287 nucleotides
GFF345 - ATP binding protein, at 61,879 to 63,069
GFF345
GFF346 - FIG01046176: hypothetical protein, at 63,747 to 64,091
GFF346
GFF347 - hypothetical protein, at 64,173 to 64,298
GFF347
GFF637 - tRNA-SeC(p)-TCA, at 64,412 to 64,502
GFF637
GFF348 - Xyloside transporter XynT, at 64,790 to 66,172
GFF348
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1 at 62.854 kb on + strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.855 kb on - strand, within GFF345 at 62.994 kb on + strand at 62.995 kb on - strand at 63.012 kb on + strand at 63.071 kb on - strand at 63.103 kb on + strand at 63.103 kb on + strand at 63.104 kb on - strand at 63.104 kb on - strand at 63.104 kb on - strand at 63.106 kb on + strand at 63.367 kb on + strand at 63.382 kb on - strand at 63.403 kb on - strand at 63.416 kb on - strand at 63.424 kb on + strand at 63.425 kb on - strand at 63.425 kb on - strand at 63.586 kb on + strand at 63.589 kb on + strand at 63.628 kb on - strand at 63.877 kb on + strand, within GFF346 at 63.937 kb on - strand, within GFF346 at 63.943 kb on + strand, within GFF346 at 63.944 kb on - strand, within GFF346 at 64.013 kb on + strand, within GFF346 at 64.062 kb on + strand at 64.063 kb on - strand at 64.118 kb on - strand at 64.145 kb on - strand at 64.242 kb on - strand, within GFF347 at 64.517 kb on - strand at 64.537 kb on + strand at 64.537 kb on + strand at 64.538 kb on - strand at 64.538 kb on - strand at 64.538 kb on - strand at 64.541 kb on + strand at 64.715 kb on + strand at 64.716 kb on - strand at 64.760 kb on - strand at 64.789 kb on - strand at 64.881 kb on - strand at 64.882 kb on + strand at 64.981 kb on + strand, within GFF348 at 64.982 kb on - strand, within GFF348 at 65.081 kb on + strand, within GFF348 at 65.081 kb on + strand, within GFF348
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 62,854 + GFF345 0.82 +0.1 62,855 - GFF345 0.82 +0.6 62,855 - GFF345 0.82 -0.1 62,855 - GFF345 0.82 +0.3 62,855 - GFF345 0.82 +0.4 62,994 + -0.2 62,995 - -0.3 63,012 + -0.2 63,071 - +0.0 63,103 + -0.3 63,103 + -0.0 63,104 - +0.4 63,104 - -0.4 63,104 - -0.3 63,106 + +0.3 63,367 + +0.2 63,382 - +0.3 63,403 - +0.2 63,416 - -0.1 63,424 + +0.3 63,425 - -0.9 63,425 - -0.2 63,586 + -0.0 63,589 + -0.1 63,628 - +0.4 63,877 + GFF346 0.38 -0.7 63,937 - GFF346 0.55 -0.2 63,943 + GFF346 0.57 -0.2 63,944 - GFF346 0.57 -0.3 64,013 + GFF346 0.77 -0.6 64,062 + -0.4 64,063 - -0.4 64,118 - -0.5 64,145 - -1.2 64,242 - GFF347 0.55 -0.5 64,517 - +0.1 64,537 + +1.1 64,537 + +0.3 64,538 - +0.1 64,538 - +0.4 64,538 - -0.6 64,541 + +0.3 64,715 + -0.1 64,716 - +0.2 64,760 - -0.7 64,789 - -0.3 64,881 - +0.1 64,882 + -1.4 64,981 + GFF348 0.14 -0.2 64,982 - GFF348 0.14 +0.6 65,081 + GFF348 0.21 -0.4 65,081 + GFF348 0.21 -0.3
Or see this region's nucleotide sequence