Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF338 and GFF339 overlap by 8 nucleotides GFF339 and GFF340 are separated by 94 nucleotides GFF340 and GFF341 are separated by 74 nucleotides
GFF338 - Putative sensory transducer, at 54,116 to 54,880
GFF338
GFF339 - YqeJ protein, at 54,873 to 55,355
GFF339
GFF340 - autotransporter, at 55,450 to 58,317
GFF340
GFF341 - RmbA, at 58,392 to 59,009
GFF341
Position (kb) 55
56
57
58
59 Strain fitness (log2 ratio) -1
0
1 at 54.502 kb on + strand, within GFF338 at 54.502 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.528 kb on - strand, within GFF338 at 54.532 kb on - strand, within GFF338 at 54.583 kb on + strand, within GFF338 at 54.584 kb on - strand, within GFF338 at 54.585 kb on + strand, within GFF338 at 54.710 kb on - strand, within GFF338 at 55.138 kb on - strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.271 kb on + strand, within GFF339 at 55.272 kb on - strand, within GFF339 at 55.494 kb on - strand at 55.531 kb on + strand at 55.644 kb on + strand at 55.645 kb on - strand at 55.645 kb on - strand at 55.647 kb on + strand at 55.724 kb on + strand at 55.725 kb on - strand at 55.782 kb on + strand, within GFF340 at 55.783 kb on - strand, within GFF340 at 55.826 kb on - strand, within GFF340 at 55.889 kb on + strand, within GFF340 at 55.965 kb on + strand, within GFF340 at 55.980 kb on - strand, within GFF340 at 56.001 kb on - strand, within GFF340 at 56.001 kb on - strand, within GFF340 at 56.026 kb on - strand, within GFF340 at 56.031 kb on - strand, within GFF340 at 56.084 kb on + strand, within GFF340 at 56.145 kb on + strand, within GFF340 at 56.200 kb on + strand, within GFF340 at 56.207 kb on + strand, within GFF340 at 56.207 kb on + strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.227 kb on + strand, within GFF340 at 56.322 kb on - strand, within GFF340 at 56.378 kb on + strand, within GFF340 at 56.378 kb on + strand, within GFF340 at 56.378 kb on + strand, within GFF340 at 56.393 kb on + strand, within GFF340 at 56.393 kb on + strand, within GFF340 at 56.394 kb on - strand, within GFF340 at 56.453 kb on - strand, within GFF340 at 56.504 kb on - strand, within GFF340 at 56.648 kb on + strand, within GFF340 at 56.648 kb on + strand, within GFF340 at 56.649 kb on - strand, within GFF340 at 56.670 kb on + strand, within GFF340 at 56.690 kb on + strand, within GFF340 at 56.691 kb on - strand, within GFF340 at 56.696 kb on + strand, within GFF340 at 56.758 kb on - strand, within GFF340 at 56.805 kb on + strand, within GFF340 at 56.806 kb on - strand, within GFF340 at 56.889 kb on + strand, within GFF340 at 56.889 kb on + strand, within GFF340 at 56.889 kb on + strand, within GFF340 at 56.889 kb on + strand, within GFF340 at 56.892 kb on + strand, within GFF340 at 56.918 kb on - strand, within GFF340 at 56.918 kb on - strand, within GFF340 at 56.922 kb on - strand, within GFF340 at 56.922 kb on - strand, within GFF340 at 57.129 kb on + strand, within GFF340 at 57.139 kb on - strand, within GFF340 at 57.199 kb on - strand, within GFF340 at 57.270 kb on - strand, within GFF340 at 57.301 kb on - strand, within GFF340 at 57.304 kb on - strand, within GFF340 at 57.347 kb on + strand, within GFF340 at 57.350 kb on - strand, within GFF340 at 57.350 kb on - strand, within GFF340 at 57.372 kb on - strand, within GFF340 at 57.372 kb on - strand, within GFF340 at 57.384 kb on + strand, within GFF340 at 57.438 kb on + strand, within GFF340 at 57.446 kb on + strand, within GFF340 at 57.447 kb on - strand, within GFF340 at 57.447 kb on - strand, within GFF340 at 57.481 kb on - strand, within GFF340 at 57.481 kb on - strand, within GFF340 at 57.483 kb on + strand, within GFF340 at 57.524 kb on + strand, within GFF340 at 57.525 kb on - strand, within GFF340 at 57.525 kb on - strand, within GFF340 at 57.559 kb on - strand, within GFF340 at 57.634 kb on - strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.639 kb on + strand, within GFF340 at 57.640 kb on - strand, within GFF340 at 57.741 kb on - strand, within GFF340 at 57.759 kb on - strand, within GFF340 at 57.798 kb on + strand, within GFF340 at 57.799 kb on - strand, within GFF340 at 57.799 kb on - strand, within GFF340 at 57.801 kb on - strand, within GFF340 at 57.840 kb on - strand, within GFF340 at 57.871 kb on + strand, within GFF340 at 57.930 kb on + strand, within GFF340 at 58.056 kb on + strand at 58.056 kb on + strand at 58.165 kb on - strand at 58.174 kb on + strand at 58.174 kb on + strand at 58.539 kb on + strand, within GFF341
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 54,502 + GFF338 0.50 -0.3 54,502 + GFF338 0.50 +0.2 54,527 + GFF338 0.54 +0.3 54,527 + GFF338 0.54 +0.5 54,528 - GFF338 0.54 +0.2 54,532 - GFF338 0.54 -0.4 54,583 + GFF338 0.61 -0.1 54,584 - GFF338 0.61 +0.3 54,585 + GFF338 0.61 +0.7 54,710 - GFF338 0.78 -0.1 55,138 - GFF339 0.55 -0.1 55,141 + GFF339 0.55 -0.5 55,141 + GFF339 0.55 +0.3 55,271 + GFF339 0.82 +0.2 55,272 - GFF339 0.83 -0.1 55,494 - -0.3 55,531 + +0.5 55,644 + -0.9 55,645 - -0.0 55,645 - -0.2 55,647 + -0.3 55,724 + -0.1 55,725 - +0.2 55,782 + GFF340 0.12 -0.4 55,783 - GFF340 0.12 -0.4 55,826 - GFF340 0.13 +0.2 55,889 + GFF340 0.15 +0.5 55,965 + GFF340 0.18 +0.8 55,980 - GFF340 0.18 -0.3 56,001 - GFF340 0.19 -0.1 56,001 - GFF340 0.19 -0.4 56,026 - GFF340 0.20 +0.3 56,031 - GFF340 0.20 -0.2 56,084 + GFF340 0.22 -0.3 56,145 + GFF340 0.24 +0.5 56,200 + GFF340 0.26 -0.4 56,207 + GFF340 0.26 +0.1 56,207 + GFF340 0.26 +0.2 56,208 - GFF340 0.26 +0.2 56,208 - GFF340 0.26 +0.0 56,208 - GFF340 0.26 -0.0 56,227 + GFF340 0.27 -0.4 56,322 - GFF340 0.30 +0.1 56,378 + GFF340 0.32 +0.2 56,378 + GFF340 0.32 +0.1 56,378 + GFF340 0.32 -0.0 56,393 + GFF340 0.33 -0.3 56,393 + GFF340 0.33 -0.5 56,394 - GFF340 0.33 -0.3 56,453 - GFF340 0.35 -0.3 56,504 - GFF340 0.37 -0.1 56,648 + GFF340 0.42 -0.3 56,648 + GFF340 0.42 +0.0 56,649 - GFF340 0.42 -0.1 56,670 + GFF340 0.43 +0.1 56,690 + GFF340 0.43 -0.0 56,691 - GFF340 0.43 +0.5 56,696 + GFF340 0.43 -0.3 56,758 - GFF340 0.46 +0.4 56,805 + GFF340 0.47 -0.1 56,806 - GFF340 0.47 +0.1 56,889 + GFF340 0.50 +0.0 56,889 + GFF340 0.50 -1.1 56,889 + GFF340 0.50 +1.0 56,889 + GFF340 0.50 +0.1 56,892 + GFF340 0.50 -0.2 56,918 - GFF340 0.51 -0.8 56,918 - GFF340 0.51 -0.2 56,922 - GFF340 0.51 -0.2 56,922 - GFF340 0.51 +0.2 57,129 + GFF340 0.59 -0.3 57,139 - GFF340 0.59 -1.7 57,199 - GFF340 0.61 -0.1 57,270 - GFF340 0.63 -0.3 57,301 - GFF340 0.65 +0.1 57,304 - GFF340 0.65 -0.1 57,347 + GFF340 0.66 +0.1 57,350 - GFF340 0.66 -0.3 57,350 - GFF340 0.66 -0.2 57,372 - GFF340 0.67 -0.5 57,372 - GFF340 0.67 -0.3 57,384 + GFF340 0.67 -0.2 57,438 + GFF340 0.69 -0.9 57,446 + GFF340 0.70 -0.2 57,447 - GFF340 0.70 +0.3 57,447 - GFF340 0.70 +0.3 57,481 - GFF340 0.71 -0.1 57,481 - GFF340 0.71 -0.1 57,483 + GFF340 0.71 -0.4 57,524 + GFF340 0.72 -0.2 57,525 - GFF340 0.72 +0.2 57,525 - GFF340 0.72 +0.2 57,559 - GFF340 0.74 -0.5 57,634 - GFF340 0.76 -0.1 57,639 + GFF340 0.76 -0.9 57,639 + GFF340 0.76 +0.2 57,639 + GFF340 0.76 -0.3 57,639 + GFF340 0.76 -0.7 57,639 + GFF340 0.76 +0.4 57,639 + GFF340 0.76 -0.2 57,640 - GFF340 0.76 -0.0 57,741 - GFF340 0.80 -0.1 57,759 - GFF340 0.81 +0.3 57,798 + GFF340 0.82 -0.3 57,799 - GFF340 0.82 -0.2 57,799 - GFF340 0.82 -0.0 57,801 - GFF340 0.82 -0.2 57,840 - GFF340 0.83 -0.6 57,871 + GFF340 0.84 -0.1 57,930 + GFF340 0.86 -0.4 58,056 + -0.2 58,056 + -0.5 58,165 - +0.1 58,174 + -0.3 58,174 + -0.2 58,539 + GFF341 0.24 +0.1
Or see this region's nucleotide sequence