Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3357 and GFF3358 are separated by 20 nucleotides GFF3358 and GFF3359 are separated by 13 nucleotides GFF3359 and GFF3360 are separated by 87 nucleotides GFF3360 and GFF3361 are separated by 11 nucleotides
GFF3357 - Flagellar hook protein FlgE, at 121,860 to 123,071
GFF3357
GFF3358 - Flagellar basal-body rod protein FlgF, at 123,092 to 123,847
GFF3358
GFF3359 - Flagellar basal-body rod protein FlgG, at 123,861 to 124,643
GFF3359
GFF3360 - Flagellar L-ring protein FlgH, at 124,731 to 125,396
GFF3360
GFF3361 - Flagellar P-ring protein FlgI, at 125,408 to 126,505
GFF3361
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1 at 122.981 kb on + strand at 123.003 kb on + strand at 123.004 kb on - strand at 123.309 kb on - strand, within GFF3358 at 123.386 kb on + strand, within GFF3358 at 123.388 kb on + strand, within GFF3358 at 123.694 kb on + strand, within GFF3358 at 123.695 kb on - strand, within GFF3358 at 123.823 kb on + strand at 123.848 kb on + strand at 123.962 kb on + strand, within GFF3359 at 123.997 kb on - strand, within GFF3359 at 124.200 kb on + strand, within GFF3359 at 124.201 kb on - strand, within GFF3359 at 124.435 kb on - strand, within GFF3359 at 124.503 kb on + strand, within GFF3359 at 124.512 kb on + strand, within GFF3359 at 124.779 kb on - strand at 124.871 kb on + strand, within GFF3360 at 124.875 kb on + strand, within GFF3360 at 124.882 kb on - strand, within GFF3360 at 125.044 kb on + strand, within GFF3360 at 125.180 kb on - strand, within GFF3360 at 125.180 kb on - strand, within GFF3360 at 125.316 kb on + strand, within GFF3360 at 125.316 kb on + strand, within GFF3360 at 125.394 kb on + strand at 125.395 kb on - strand at 125.395 kb on - strand at 125.405 kb on + strand at 125.405 kb on + strand at 125.406 kb on - strand at 125.406 kb on - strand at 125.641 kb on + strand, within GFF3361 at 125.642 kb on - strand, within GFF3361
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 122,981 + +1.0 123,003 + +0.6 123,004 - +0.6 123,309 - GFF3358 0.29 +0.2 123,386 + GFF3358 0.39 +1.0 123,388 + GFF3358 0.39 +0.7 123,694 + GFF3358 0.80 +1.0 123,695 - GFF3358 0.80 +1.0 123,823 + -0.5 123,848 + +0.2 123,962 + GFF3359 0.13 +0.8 123,997 - GFF3359 0.17 +1.4 124,200 + GFF3359 0.43 +1.2 124,201 - GFF3359 0.43 +0.4 124,435 - GFF3359 0.73 +0.7 124,503 + GFF3359 0.82 +1.5 124,512 + GFF3359 0.83 +1.0 124,779 - +0.9 124,871 + GFF3360 0.21 +0.9 124,875 + GFF3360 0.22 +1.0 124,882 - GFF3360 0.23 +1.0 125,044 + GFF3360 0.47 +1.0 125,180 - GFF3360 0.67 +0.4 125,180 - GFF3360 0.67 +0.4 125,316 + GFF3360 0.88 +1.1 125,316 + GFF3360 0.88 +0.6 125,394 + +0.9 125,395 - +0.7 125,395 - +0.7 125,405 + +0.6 125,405 + +1.6 125,406 - +0.2 125,406 - +0.4 125,641 + GFF3361 0.21 +0.6 125,642 - GFF3361 0.21 +1.3
Or see this region's nucleotide sequence