Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF314

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF313 and GFF314 are separated by 62 nucleotidesGFF314 and GFF315 are separated by 9 nucleotidesGFF315 and GFF316 are separated by 90 nucleotidesGFF316 and GFF317 overlap by 17 nucleotides GFF313 - Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase, at 30,841 to 32,325 GFF313 GFF314 - Fructose-bisphosphate aldolase (EC 4.1.2.13), at 32,388 to 33,248 GFF314 GFF315 - Phosphotransferase system HPr enzyme STM3779, at 33,258 to 33,527 GFF315 GFF316 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 33,618 to 33,941 GFF316 GFF317 - FIG074102: hypothetical protein, at 33,925 to 34,329 GFF317 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.466 kb on + strand, within GFF313at 31.535 kb on + strand, within GFF313at 31.564 kb on - strand, within GFF313at 31.638 kb on - strand, within GFF313at 31.648 kb on - strand, within GFF313at 32.406 kb on - strandat 32.799 kb on - strand, within GFF314at 32.917 kb on + strand, within GFF314at 32.917 kb on + strand, within GFF314at 32.917 kb on + strand, within GFF314at 32.959 kb on + strand, within GFF314at 33.044 kb on + strand, within GFF314at 33.055 kb on + strand, within GFF314at 33.056 kb on - strand, within GFF314at 33.255 kb on + strandat 33.281 kb on + strandat 33.524 kb on - strandat 33.634 kb on - strandat 33.656 kb on + strand, within GFF316at 33.656 kb on + strand, within GFF316at 33.657 kb on - strand, within GFF316at 33.657 kb on - strand, within GFF316at 33.657 kb on - strand, within GFF316at 33.966 kb on + strand, within GFF317at 33.967 kb on - strand, within GFF317at 34.007 kb on + strand, within GFF317at 34.018 kb on + strand, within GFF317at 34.046 kb on + strand, within GFF317at 34.050 kb on + strand, within GFF317at 34.050 kb on + strand, within GFF317at 34.050 kb on + strand, within GFF317at 34.051 kb on - strand, within GFF317at 34.051 kb on - strand, within GFF317at 34.051 kb on - strand, within GFF317at 34.176 kb on + strand, within GFF317at 34.216 kb on + strand, within GFF317at 34.216 kb on + strand, within GFF317

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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31,466 + GFF313 0.42 -0.2
31,535 + GFF313 0.47 +0.1
31,564 - GFF313 0.49 -0.5
31,638 - GFF313 0.54 -0.2
31,648 - GFF313 0.54 +0.0
32,406 - +0.2
32,799 - GFF314 0.48 -0.4
32,917 + GFF314 0.61 -0.0
32,917 + GFF314 0.61 -0.6
32,917 + GFF314 0.61 -0.4
32,959 + GFF314 0.66 -0.8
33,044 + GFF314 0.76 -1.3
33,055 + GFF314 0.77 -0.8
33,056 - GFF314 0.78 +0.3
33,255 + +0.1
33,281 + -0.2
33,524 - +0.5
33,634 - -0.3
33,656 + GFF316 0.12 +1.8
33,656 + GFF316 0.12 +0.0
33,657 - GFF316 0.12 -0.0
33,657 - GFF316 0.12 +0.1
33,657 - GFF316 0.12 -0.1
33,966 + GFF317 0.10 -0.5
33,967 - GFF317 0.10 +0.3
34,007 + GFF317 0.20 -0.0
34,018 + GFF317 0.23 +0.5
34,046 + GFF317 0.30 -0.4
34,050 + GFF317 0.31 +0.0
34,050 + GFF317 0.31 -0.3
34,050 + GFF317 0.31 -0.3
34,051 - GFF317 0.31 +0.2
34,051 - GFF317 0.31 +0.0
34,051 - GFF317 0.31 -0.1
34,176 + GFF317 0.62 +0.1
34,216 + GFF317 0.72 -0.4
34,216 + GFF317 0.72 +0.0

Or see this region's nucleotide sequence