Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF312

Experiment: LB_plus_SM_buffer

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF309 and GFF310 are separated by 332 nucleotidesGFF310 and GFF311 are separated by 65 nucleotidesGFF311 and GFF312 are separated by 75 nucleotidesGFF312 and GFF313 overlap by 8 nucleotides GFF309 - Putative transcriptional regulator of unknown carbohydrate utilization cluster, GntR family, at 27,896 to 28,639 GFF309 GFF310 - Putative carbohydrate PTS system, IIA component (EC 2.7.1.69), at 28,972 to 29,130 GFF310 GFF311 - Putative carbohydrate PTS system, IIB component (EC 2.7.1.69), at 29,196 to 29,414 GFF311 GFF312 - Putative carbohydrate PTS system, IIC component (EC 2.7.1.69), at 29,490 to 30,848 GFF312 GFF313 - Putative carbohydrate kinase in cluster with fructose-bisphosphate aldolase, at 30,841 to 32,325 GFF313 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 28.930 kb on - strandat 28.971 kb on + strandat 29.143 kb on + strandat 29.144 kb on - strandat 29.501 kb on - strandat 29.507 kb on + strandat 29.674 kb on + strand, within GFF312at 29.678 kb on + strand, within GFF312at 29.679 kb on - strand, within GFF312at 29.689 kb on + strand, within GFF312at 29.825 kb on + strand, within GFF312at 29.825 kb on + strand, within GFF312at 29.849 kb on + strand, within GFF312at 29.858 kb on + strand, within GFF312at 29.859 kb on - strand, within GFF312at 29.859 kb on - strand, within GFF312at 29.883 kb on + strand, within GFF312at 30.019 kb on - strand, within GFF312at 30.195 kb on - strand, within GFF312at 30.228 kb on + strand, within GFF312at 30.342 kb on - strand, within GFF312at 30.363 kb on + strand, within GFF312at 30.434 kb on + strand, within GFF312at 30.434 kb on + strand, within GFF312at 30.455 kb on + strand, within GFF312at 30.455 kb on + strand, within GFF312at 30.456 kb on - strand, within GFF312at 30.492 kb on - strand, within GFF312at 30.767 kb on + strandat 30.768 kb on - strandat 30.850 kb on + strandat 30.885 kb on + strandat 31.066 kb on - strand, within GFF313at 31.145 kb on - strand, within GFF313at 31.204 kb on + strand, within GFF313at 31.204 kb on + strand, within GFF313at 31.204 kb on + strand, within GFF313at 31.205 kb on - strand, within GFF313at 31.211 kb on + strand, within GFF313at 31.238 kb on - strand, within GFF313at 31.273 kb on + strand, within GFF313at 31.273 kb on + strand, within GFF313at 31.273 kb on + strand, within GFF313at 31.307 kb on + strand, within GFF313at 31.308 kb on - strand, within GFF313at 31.375 kb on - strand, within GFF313at 31.466 kb on + strand, within GFF313at 31.535 kb on + strand, within GFF313at 31.564 kb on - strand, within GFF313at 31.638 kb on - strand, within GFF313at 31.648 kb on - strand, within GFF313

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
remove
28,930 - -0.7
28,971 + -0.9
29,143 + -0.1
29,144 - +0.1
29,501 - -0.2
29,507 + -0.2
29,674 + GFF312 0.14 -0.4
29,678 + GFF312 0.14 -0.2
29,679 - GFF312 0.14 -0.3
29,689 + GFF312 0.15 -2.6
29,825 + GFF312 0.25 +0.1
29,825 + GFF312 0.25 -0.6
29,849 + GFF312 0.26 -0.3
29,858 + GFF312 0.27 -0.1
29,859 - GFF312 0.27 -0.6
29,859 - GFF312 0.27 -0.2
29,883 + GFF312 0.29 +0.4
30,019 - GFF312 0.39 -0.6
30,195 - GFF312 0.52 -0.1
30,228 + GFF312 0.54 -0.2
30,342 - GFF312 0.63 -1.0
30,363 + GFF312 0.64 +0.1
30,434 + GFF312 0.69 -0.7
30,434 + GFF312 0.69 +0.0
30,455 + GFF312 0.71 -0.2
30,455 + GFF312 0.71 +0.6
30,456 - GFF312 0.71 -0.9
30,492 - GFF312 0.74 -0.3
30,767 + +0.7
30,768 - +0.1
30,850 + +0.5
30,885 + +0.4
31,066 - GFF313 0.15 +0.0
31,145 - GFF313 0.20 +0.0
31,204 + GFF313 0.24 +0.3
31,204 + GFF313 0.24 +0.1
31,204 + GFF313 0.24 -0.2
31,205 - GFF313 0.25 -0.2
31,211 + GFF313 0.25 +0.1
31,238 - GFF313 0.27 -0.2
31,273 + GFF313 0.29 +0.1
31,273 + GFF313 0.29 +0.3
31,273 + GFF313 0.29 +0.1
31,307 + GFF313 0.31 -0.4
31,308 - GFF313 0.31 +0.3
31,375 - GFF313 0.36 -0.1
31,466 + GFF313 0.42 -0.2
31,535 + GFF313 0.47 +0.1
31,564 - GFF313 0.49 -0.5
31,638 - GFF313 0.54 -0.2
31,648 - GFF313 0.54 +0.0

Or see this region's nucleotide sequence