Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF307 and GFF308 are separated by 192 nucleotides GFF308 and GFF309 are separated by 352 nucleotides GFF309 and GFF310 are separated by 332 nucleotides GFF310 and GFF311 are separated by 65 nucleotides GFF311 and GFF312 are separated by 75 nucleotides
GFF307 - Hexose phosphate transport protein UhpT, at 25,507 to 26,898
GFF307
GFF308 - probable membrane protein YPO2654, at 27,091 to 27,543
GFF308
GFF309 - Putative transcriptional regulator of unknown carbohydrate utilization cluster, GntR family, at 27,896 to 28,639
GFF309
GFF310 - Putative carbohydrate PTS system, IIA component (EC 2.7.1.69), at 28,972 to 29,130
GFF310
GFF311 - Putative carbohydrate PTS system, IIB component (EC 2.7.1.69), at 29,196 to 29,414
GFF311
GFF312 - Putative carbohydrate PTS system, IIC component (EC 2.7.1.69), at 29,490 to 30,848
GFF312
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.946 kb on + strand at 27.007 kb on + strand at 27.129 kb on + strand at 27.198 kb on + strand, within GFF308 at 27.317 kb on + strand, within GFF308 at 27.418 kb on - strand, within GFF308 at 27.425 kb on + strand, within GFF308 at 27.498 kb on + strand at 27.544 kb on + strand at 27.555 kb on - strand at 27.646 kb on - strand at 27.664 kb on + strand at 27.690 kb on + strand at 27.691 kb on - strand at 27.735 kb on - strand at 27.735 kb on - strand at 27.735 kb on - strand at 27.757 kb on + strand at 27.758 kb on - strand at 27.760 kb on - strand at 27.812 kb on - strand at 27.865 kb on - strand at 27.867 kb on - strand at 27.965 kb on - strand at 27.965 kb on - strand at 27.969 kb on - strand at 27.969 kb on - strand at 28.216 kb on - strand, within GFF309 at 28.249 kb on - strand, within GFF309 at 28.930 kb on - strand at 28.971 kb on + strand at 29.143 kb on + strand at 29.144 kb on - strand at 29.501 kb on - strand at 29.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 26,946 + -0.0 27,007 + +0.1 27,129 + +0.0 27,198 + GFF308 0.24 +0.1 27,317 + GFF308 0.50 +0.3 27,418 - GFF308 0.72 -0.2 27,425 + GFF308 0.74 +0.3 27,498 + -0.4 27,544 + +0.2 27,555 - +0.2 27,646 - +0.3 27,664 + +0.4 27,690 + +0.1 27,691 - +0.4 27,735 - -0.0 27,735 - -0.2 27,735 - -0.0 27,757 + -0.2 27,758 - -0.0 27,760 - -0.2 27,812 - -1.0 27,865 - +0.0 27,867 - +0.1 27,965 - +0.3 27,965 - +0.3 27,969 - -0.1 27,969 - +0.1 28,216 - GFF309 0.43 -1.2 28,249 - GFF309 0.47 -0.7 28,930 - -0.7 28,971 + -0.9 29,143 + -0.1 29,144 - +0.1 29,501 - -0.2 29,507 + -0.2
Or see this region's nucleotide sequence