Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF301 and GFF302 are separated by 30 nucleotides GFF302 and GFF303 are separated by 11 nucleotides
GFF301 - Ribokinase (EC 2.7.1.15), at 18,567 to 19,487
GFF301
GFF302 - Homolog of fucose/glucose/galactose permeases, at 19,518 to 20,834
GFF302
GFF303 - Putative uncharacterized protein STY3991, at 20,846 to 21,859
GFF303
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.605 kb on + strand at 18.612 kb on + strand at 18.613 kb on - strand at 18.755 kb on + strand, within GFF301 at 18.810 kb on + strand, within GFF301 at 18.810 kb on + strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.811 kb on - strand, within GFF301 at 18.823 kb on + strand, within GFF301 at 19.079 kb on + strand, within GFF301 at 19.086 kb on + strand, within GFF301 at 19.087 kb on - strand, within GFF301 at 19.087 kb on - strand, within GFF301 at 19.157 kb on + strand, within GFF301 at 19.162 kb on - strand, within GFF301 at 19.217 kb on + strand, within GFF301 at 19.217 kb on + strand, within GFF301 at 19.347 kb on + strand, within GFF301 at 19.350 kb on + strand, within GFF301 at 19.351 kb on - strand, within GFF301 at 19.351 kb on - strand, within GFF301 at 19.485 kb on + strand at 19.486 kb on - strand at 19.512 kb on - strand at 19.512 kb on - strand at 19.780 kb on + strand, within GFF302 at 19.781 kb on - strand, within GFF302 at 19.800 kb on + strand, within GFF302 at 19.801 kb on - strand, within GFF302 at 19.801 kb on - strand, within GFF302 at 19.801 kb on - strand, within GFF302 at 19.801 kb on - strand, within GFF302 at 19.815 kb on - strand, within GFF302 at 19.849 kb on - strand, within GFF302 at 19.849 kb on - strand, within GFF302 at 19.921 kb on - strand, within GFF302 at 20.022 kb on + strand, within GFF302 at 20.022 kb on + strand, within GFF302 at 20.132 kb on + strand, within GFF302 at 20.132 kb on + strand, within GFF302 at 20.133 kb on - strand, within GFF302 at 20.136 kb on + strand, within GFF302 at 20.136 kb on + strand, within GFF302 at 20.137 kb on - strand, within GFF302 at 20.144 kb on + strand, within GFF302 at 20.167 kb on + strand, within GFF302 at 20.243 kb on + strand, within GFF302 at 20.254 kb on - strand, within GFF302 at 20.305 kb on - strand, within GFF302 at 20.400 kb on + strand, within GFF302 at 20.401 kb on - strand, within GFF302 at 20.515 kb on - strand, within GFF302 at 20.548 kb on - strand, within GFF302 at 20.616 kb on - strand, within GFF302 at 20.703 kb on + strand at 20.860 kb on + strand at 20.896 kb on + strand at 20.897 kb on - strand at 20.921 kb on - strand at 21.104 kb on + strand, within GFF303 at 21.104 kb on + strand, within GFF303 at 21.105 kb on - strand, within GFF303 at 21.163 kb on + strand, within GFF303 at 21.163 kb on + strand, within GFF303 at 21.261 kb on - strand, within GFF303 at 21.261 kb on - strand, within GFF303 at 21.314 kb on - strand, within GFF303 at 21.383 kb on + strand, within GFF303 at 21.383 kb on + strand, within GFF303 at 21.384 kb on - strand, within GFF303 at 21.384 kb on - strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.401 kb on + strand, within GFF303 at 21.402 kb on - strand, within GFF303 at 21.402 kb on - strand, within GFF303 at 21.407 kb on + strand, within GFF303 at 21.407 kb on + strand, within GFF303 at 21.611 kb on + strand, within GFF303 at 21.714 kb on - strand, within GFF303 at 21.714 kb on - strand, within GFF303
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 18,605 + -0.2 18,612 + +0.1 18,613 - -0.1 18,755 + GFF301 0.20 -1.0 18,810 + GFF301 0.26 +0.1 18,810 + GFF301 0.26 -1.2 18,811 - GFF301 0.26 +0.2 18,811 - GFF301 0.26 -0.0 18,811 - GFF301 0.26 -0.2 18,823 + GFF301 0.28 +0.1 19,079 + GFF301 0.56 -0.3 19,086 + GFF301 0.56 +0.3 19,087 - GFF301 0.56 -0.0 19,087 - GFF301 0.56 -0.0 19,157 + GFF301 0.64 +0.3 19,162 - GFF301 0.65 -1.4 19,217 + GFF301 0.71 +1.1 19,217 + GFF301 0.71 +0.6 19,347 + GFF301 0.85 +0.1 19,350 + GFF301 0.85 -0.1 19,351 - GFF301 0.85 -0.2 19,351 - GFF301 0.85 +0.3 19,485 + -0.0 19,486 - -0.3 19,512 - +0.3 19,512 - +0.5 19,780 + GFF302 0.20 -0.9 19,781 - GFF302 0.20 -0.1 19,800 + GFF302 0.21 +0.7 19,801 - GFF302 0.21 +0.4 19,801 - GFF302 0.21 -0.3 19,801 - GFF302 0.21 +0.0 19,801 - GFF302 0.21 -0.2 19,815 - GFF302 0.23 -0.7 19,849 - GFF302 0.25 -0.6 19,849 - GFF302 0.25 -0.1 19,921 - GFF302 0.31 -1.0 20,022 + GFF302 0.38 +0.7 20,022 + GFF302 0.38 -0.3 20,132 + GFF302 0.47 +0.1 20,132 + GFF302 0.47 -0.0 20,133 - GFF302 0.47 +0.1 20,136 + GFF302 0.47 +0.4 20,136 + GFF302 0.47 -0.0 20,137 - GFF302 0.47 -0.8 20,144 + GFF302 0.48 -0.5 20,167 + GFF302 0.49 +0.3 20,243 + GFF302 0.55 +0.3 20,254 - GFF302 0.56 -0.3 20,305 - GFF302 0.60 -0.3 20,400 + GFF302 0.67 -0.2 20,401 - GFF302 0.67 +0.2 20,515 - GFF302 0.76 -0.3 20,548 - GFF302 0.78 +1.1 20,616 - GFF302 0.83 -0.2 20,703 + -0.1 20,860 + +0.3 20,896 + +0.4 20,897 - +0.1 20,921 - +0.1 21,104 + GFF303 0.25 -0.6 21,104 + GFF303 0.25 -0.0 21,105 - GFF303 0.26 -0.1 21,163 + GFF303 0.31 -0.2 21,163 + GFF303 0.31 +0.0 21,261 - GFF303 0.41 -0.1 21,261 - GFF303 0.41 +0.2 21,314 - GFF303 0.46 -0.7 21,383 + GFF303 0.53 +0.6 21,383 + GFF303 0.53 -0.2 21,384 - GFF303 0.53 +0.1 21,384 - GFF303 0.53 +0.3 21,401 + GFF303 0.55 -0.2 21,401 + GFF303 0.55 -0.6 21,401 + GFF303 0.55 +1.1 21,402 - GFF303 0.55 -0.3 21,402 - GFF303 0.55 +0.3 21,407 + GFF303 0.55 +0.0 21,407 + GFF303 0.55 -1.0 21,611 + GFF303 0.75 -0.5 21,714 - GFF303 0.86 +0.1 21,714 - GFF303 0.86 -0.4
Or see this region's nucleotide sequence