Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF298 and GFF299 are separated by 3 nucleotides GFF299 and GFF300 are separated by 1 nucleotides
GFF298 - Acetolactate synthase large subunit (EC 2.2.1.6), at 15,473 to 17,161
GFF298
GFF299 - Acetolactate synthase small subunit (EC 2.2.1.6), at 17,165 to 17,455
GFF299
GFF300 - Deoxyribose operon repressor, DeoR family, at 17,457 to 18,242
GFF300
Position (kb)
15
16
17
18 Strain fitness (log2 ratio)
-1
0
1
2 at 14.674 kb on - strand at 14.746 kb on - strand at 14.864 kb on - strand at 14.864 kb on - strand at 15.026 kb on + strand at 15.134 kb on + strand at 15.231 kb on + strand at 15.234 kb on - strand at 15.299 kb on + strand at 15.300 kb on - strand at 15.427 kb on + strand at 15.459 kb on - strand at 15.599 kb on + strand at 15.610 kb on - strand at 15.620 kb on - strand at 15.634 kb on + strand at 15.668 kb on - strand, within GFF298 at 15.712 kb on + strand, within GFF298 at 15.722 kb on - strand, within GFF298 at 15.855 kb on - strand, within GFF298 at 16.462 kb on - strand, within GFF298 at 16.644 kb on + strand, within GFF298 at 16.823 kb on - strand, within GFF298 at 16.903 kb on - strand, within GFF298 at 16.925 kb on + strand, within GFF298 at 16.928 kb on - strand, within GFF298 at 17.050 kb on + strand at 17.458 kb on + strand at 17.458 kb on + strand at 17.519 kb on - strand at 17.543 kb on + strand, within GFF300 at 17.724 kb on - strand, within GFF300 at 17.776 kb on + strand, within GFF300 at 17.832 kb on - strand, within GFF300 at 18.035 kb on + strand, within GFF300 at 18.056 kb on + strand, within GFF300 at 18.071 kb on + strand, within GFF300
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 14,674 - +0.5 14,746 - -0.1 14,864 - -0.2 14,864 - -0.0 15,026 + +0.2 15,134 + -0.4 15,231 + +0.1 15,234 - -0.2 15,299 + +0.3 15,300 - +0.6 15,427 + +0.0 15,459 - -0.3 15,599 + +0.1 15,610 - +0.1 15,620 - +1.3 15,634 + -0.3 15,668 - GFF298 0.12 +0.6 15,712 + GFF298 0.14 -0.2 15,722 - GFF298 0.15 +0.2 15,855 - GFF298 0.23 +0.3 16,462 - GFF298 0.59 +0.6 16,644 + GFF298 0.69 -0.3 16,823 - GFF298 0.80 +0.4 16,903 - GFF298 0.85 +0.1 16,925 + GFF298 0.86 +0.3 16,928 - GFF298 0.86 +0.6 17,050 + -0.3 17,458 + +0.5 17,458 + -0.1 17,519 - +0.2 17,543 + GFF300 0.11 -0.1 17,724 - GFF300 0.34 -0.8 17,776 + GFF300 0.41 +0.4 17,832 - GFF300 0.48 +2.3 18,035 + GFF300 0.74 -0.1 18,056 + GFF300 0.76 +0.2 18,071 + GFF300 0.78 +0.3
Or see this region's nucleotide sequence