Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2936 and GFF2937 are separated by 18 nucleotides GFF2937 and GFF2938 are separated by 4 nucleotides GFF2938 and GFF2939 are separated by 7 nucleotides
GFF2936 - Uncharacterized ABC transporter, auxiliary component YrbC, at 18,422 to 19,057
GFF2936
GFF2937 - Uncharacterized ABC transporter, periplasmic component YrbD, at 19,076 to 19,627
GFF2937
GFF2938 - Uncharacterized ABC transporter, permease component YrbE, at 19,632 to 20,414
GFF2938
GFF2939 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 20,422 to 21,234
GFF2939
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.724 kb on - strand, within GFF2936 at 18.724 kb on - strand, within GFF2936 at 18.814 kb on - strand, within GFF2936 at 18.844 kb on - strand, within GFF2936 at 19.011 kb on - strand at 19.078 kb on - strand at 19.173 kb on + strand, within GFF2937 at 19.192 kb on + strand, within GFF2937 at 19.352 kb on - strand, within GFF2937 at 19.357 kb on + strand, within GFF2937 at 19.359 kb on + strand, within GFF2937 at 19.360 kb on - strand, within GFF2937 at 19.418 kb on - strand, within GFF2937 at 19.529 kb on - strand, within GFF2937 at 19.751 kb on - strand, within GFF2938 at 19.827 kb on - strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.944 kb on + strand, within GFF2938 at 20.174 kb on - strand, within GFF2938 at 20.243 kb on + strand, within GFF2938 at 20.423 kb on + strand at 20.423 kb on + strand at 20.424 kb on - strand at 20.605 kb on - strand, within GFF2939 at 20.700 kb on + strand, within GFF2939 at 20.873 kb on - strand, within GFF2939 at 20.913 kb on - strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.977 kb on - strand, within GFF2939 at 21.037 kb on + strand, within GFF2939 at 21.038 kb on - strand, within GFF2939 at 21.097 kb on - strand, within GFF2939 at 21.156 kb on + strand at 21.250 kb on - strand at 21.250 kb on - strand at 21.300 kb on + strand at 21.301 kb on - strand at 21.304 kb on + strand at 21.304 kb on + strand at 21.311 kb on + strand at 21.401 kb on - strand at 21.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 18,724 - GFF2936 0.47 +0.3 18,724 - GFF2936 0.47 +0.5 18,814 - GFF2936 0.62 +0.6 18,844 - GFF2936 0.66 +0.2 19,011 - +0.3 19,078 - -0.1 19,173 + GFF2937 0.18 -0.4 19,192 + GFF2937 0.21 +0.2 19,352 - GFF2937 0.50 +0.4 19,357 + GFF2937 0.51 +1.6 19,359 + GFF2937 0.51 -0.1 19,360 - GFF2937 0.51 +0.3 19,418 - GFF2937 0.62 +0.6 19,529 - GFF2937 0.82 +0.2 19,751 - GFF2938 0.15 -0.1 19,827 - GFF2938 0.25 -0.3 19,934 + GFF2938 0.39 +0.2 19,934 + GFF2938 0.39 -0.4 19,944 + GFF2938 0.40 -0.0 20,174 - GFF2938 0.69 -0.4 20,243 + GFF2938 0.78 -0.5 20,423 + +0.3 20,423 + -0.2 20,424 - -0.7 20,605 - GFF2939 0.23 -0.4 20,700 + GFF2939 0.34 +2.6 20,873 - GFF2939 0.55 -0.0 20,913 - GFF2939 0.60 +0.3 20,976 + GFF2939 0.68 +0.2 20,976 + GFF2939 0.68 +0.1 20,977 - GFF2939 0.68 +0.2 21,037 + GFF2939 0.76 -0.1 21,038 - GFF2939 0.76 +0.4 21,097 - GFF2939 0.83 +0.0 21,156 + -3.1 21,250 - +0.2 21,250 - +0.7 21,300 + -0.3 21,301 - -0.1 21,304 + +0.5 21,304 + -0.1 21,311 + -0.0 21,401 - +0.3 21,401 - -1.1
Or see this region's nucleotide sequence