Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF284

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF281 and GFF282 are separated by 1 nucleotidesGFF282 and GFF283 overlap by 2 nucleotidesGFF283 and GFF284 are separated by 257 nucleotidesGFF284 and GFF285 are separated by 109 nucleotidesGFF285 and GFF286 are separated by 189 nucleotides GFF281 - Uncharacterized protein YidR, at 879 to 2,105 GFF281 GFF282 - Outer membrane lipoprotein YidQ, at 2,107 to 2,367 GFF282 GFF283 - hypothetical protein, at 2,366 to 2,485 GFF283 GFF284 - 16 kDa heat shock protein A, at 2,743 to 3,162 GFF284 GFF285 - 16 kDa heat shock protein B, at 3,272 to 3,700 GFF285 GFF286 - Mediator of hyperadherence YidE, at 3,890 to 5,551 GFF286 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1at 1.758 kb on - strand, within GFF281at 1.856 kb on - strand, within GFF281at 1.876 kb on + strand, within GFF281at 1.890 kb on - strand, within GFF281at 2.080 kb on + strandat 2.081 kb on - strandat 2.104 kb on - strandat 2.232 kb on + strand, within GFF282at 2.232 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.390 kb on - strand, within GFF283at 2.390 kb on - strand, within GFF283at 2.410 kb on + strand, within GFF283at 2.481 kb on + strandat 2.484 kb on - strandat 2.613 kb on + strandat 2.624 kb on + strandat 2.628 kb on + strandat 2.642 kb on + strandat 2.644 kb on + strandat 2.651 kb on + strandat 2.652 kb on - strandat 2.742 kb on + strandat 2.823 kb on + strand, within GFF284at 2.887 kb on + strand, within GFF284at 2.997 kb on + strand, within GFF284at 2.998 kb on - strand, within GFF284at 2.998 kb on - strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.002 kb on - strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.101 kb on - strand, within GFF284at 3.102 kb on + strand, within GFF284at 3.255 kb on + strandat 3.256 kb on - strandat 3.271 kb on + strandat 3.278 kb on - strandat 3.281 kb on + strandat 3.282 kb on - strandat 3.376 kb on + strand, within GFF285at 3.413 kb on - strand, within GFF285at 3.620 kb on - strand, within GFF285at 3.690 kb on + strandat 3.695 kb on - strandat 3.698 kb on + strandat 3.699 kb on - strandat 3.699 kb on - strandat 3.824 kb on + strandat 3.824 kb on + strandat 3.825 kb on - strandat 3.825 kb on - strandat 3.826 kb on + strandat 3.826 kb on + strandat 3.827 kb on - strandat 3.827 kb on - strandat 3.827 kb on - strandat 3.828 kb on + strandat 3.828 kb on + strandat 3.828 kb on + strandat 3.829 kb on - strandat 3.961 kb on + strandat 4.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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1,758 - GFF281 0.72 +0.2
1,856 - GFF281 0.80 +0.0
1,876 + GFF281 0.81 -0.8
1,890 - GFF281 0.82 +0.1
2,080 + +0.0
2,081 - +1.5
2,104 - +0.5
2,232 + GFF282 0.48 +0.1
2,232 + GFF282 0.48 +1.5
2,336 + GFF282 0.88 +0.0
2,336 + GFF282 0.88 -0.1
2,341 - GFF282 0.90 -1.6
2,341 - GFF282 0.90 +0.1
2,341 - GFF282 0.90 +0.6
2,390 - GFF283 0.20 -0.5
2,390 - GFF283 0.20 -0.1
2,410 + GFF283 0.37 +0.7
2,481 + -0.3
2,484 - +0.1
2,613 + +0.3
2,624 + -1.0
2,628 + +0.0
2,642 + -0.8
2,644 + +0.0
2,651 + -0.6
2,652 - -0.8
2,742 + -0.1
2,823 + GFF284 0.19 -0.1
2,887 + GFF284 0.34 -0.9
2,997 + GFF284 0.60 -0.3
2,998 - GFF284 0.61 -0.0
2,998 - GFF284 0.61 -0.8
3,001 + GFF284 0.61 -0.1
3,001 + GFF284 0.61 +0.6
3,002 - GFF284 0.62 +0.4
3,039 + GFF284 0.70 -0.0
3,039 + GFF284 0.70 +0.0
3,100 + GFF284 0.85 -0.4
3,100 + GFF284 0.85 -0.0
3,101 - GFF284 0.85 -1.0
3,102 + GFF284 0.85 -0.3
3,255 + -1.9
3,256 - -0.1
3,271 + +0.2
3,278 - -0.2
3,281 + +0.1
3,282 - +0.3
3,376 + GFF285 0.24 -0.4
3,413 - GFF285 0.33 -0.2
3,620 - GFF285 0.81 -0.1
3,690 + -0.1
3,695 - -0.1
3,698 + -0.0
3,699 - -0.1
3,699 - -0.3
3,824 + +0.3
3,824 + +0.5
3,825 - -0.0
3,825 - -0.2
3,826 + +0.0
3,826 + -0.4
3,827 - -0.6
3,827 - -0.1
3,827 - -0.3
3,828 + -0.2
3,828 + +0.1
3,828 + -1.6
3,829 - +0.2
3,961 + +0.2
4,012 + -0.1

Or see this region's nucleotide sequence