Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2785 and GFF2786 are separated by 270 nucleotides GFF2786 and GFF2787 are separated by 11 nucleotides GFF2787 and GFF2788 overlap by 4 nucleotides
GFF2785 - FIG01045804: hypothetical protein, at 308,337 to 309,602
GFF2785
GFF2786 - hypothetical protein, at 309,873 to 310,001
GFF2786
GFF2787 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 310,013 to 311,215
GFF2787
GFF2788 - Uptake hydrogenase large subunit (EC 1.12.99.6), at 311,212 to 313,005
GFF2788
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1 at 309.123 kb on - strand, within GFF2785 at 309.128 kb on - strand, within GFF2785 at 309.385 kb on - strand, within GFF2785 at 309.735 kb on - strand at 309.786 kb on + strand at 309.862 kb on + strand at 309.866 kb on + strand at 309.868 kb on + strand at 309.951 kb on - strand, within GFF2786 at 310.443 kb on - strand, within GFF2787 at 310.495 kb on + strand, within GFF2787 at 310.715 kb on + strand, within GFF2787 at 310.715 kb on + strand, within GFF2787 at 310.716 kb on - strand, within GFF2787 at 310.717 kb on + strand, within GFF2787 at 310.795 kb on + strand, within GFF2787 at 310.910 kb on + strand, within GFF2787 at 310.911 kb on - strand, within GFF2787 at 311.038 kb on + strand, within GFF2787 at 311.038 kb on + strand, within GFF2787 at 311.242 kb on - strand at 311.340 kb on + strand at 311.434 kb on - strand, within GFF2788 at 311.444 kb on + strand, within GFF2788 at 311.445 kb on - strand, within GFF2788 at 311.445 kb on - strand, within GFF2788 at 311.445 kb on - strand, within GFF2788 at 311.449 kb on - strand, within GFF2788 at 311.457 kb on - strand, within GFF2788 at 311.476 kb on + strand, within GFF2788 at 311.477 kb on - strand, within GFF2788 at 311.523 kb on + strand, within GFF2788 at 311.524 kb on - strand, within GFF2788 at 311.527 kb on - strand, within GFF2788 at 311.527 kb on - strand, within GFF2788 at 311.528 kb on + strand, within GFF2788 at 311.528 kb on + strand, within GFF2788 at 311.532 kb on + strand, within GFF2788 at 311.902 kb on - strand, within GFF2788 at 311.970 kb on + strand, within GFF2788 at 311.970 kb on + strand, within GFF2788 at 312.024 kb on + strand, within GFF2788 at 312.170 kb on + strand, within GFF2788 at 312.213 kb on + strand, within GFF2788
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 309,123 - GFF2785 0.62 +0.5 309,128 - GFF2785 0.62 +0.6 309,385 - GFF2785 0.83 +0.3 309,735 - -0.4 309,786 + +0.2 309,862 + -0.6 309,866 + -0.5 309,868 + +0.1 309,951 - GFF2786 0.60 +1.5 310,443 - GFF2787 0.36 +0.2 310,495 + GFF2787 0.40 +0.3 310,715 + GFF2787 0.58 +0.0 310,715 + GFF2787 0.58 -0.1 310,716 - GFF2787 0.58 +0.5 310,717 + GFF2787 0.59 +1.7 310,795 + GFF2787 0.65 -0.7 310,910 + GFF2787 0.75 +0.1 310,911 - GFF2787 0.75 -2.5 311,038 + GFF2787 0.85 +0.8 311,038 + GFF2787 0.85 +1.4 311,242 - -0.4 311,340 + -0.3 311,434 - GFF2788 0.12 -0.1 311,444 + GFF2788 0.13 -0.0 311,445 - GFF2788 0.13 +0.2 311,445 - GFF2788 0.13 +0.5 311,445 - GFF2788 0.13 +0.6 311,449 - GFF2788 0.13 +0.4 311,457 - GFF2788 0.14 -0.4 311,476 + GFF2788 0.15 -0.4 311,477 - GFF2788 0.15 +0.4 311,523 + GFF2788 0.17 +0.2 311,524 - GFF2788 0.17 -0.3 311,527 - GFF2788 0.18 +0.1 311,527 - GFF2788 0.18 +0.2 311,528 + GFF2788 0.18 -0.6 311,528 + GFF2788 0.18 +0.1 311,532 + GFF2788 0.18 +0.9 311,902 - GFF2788 0.38 +0.1 311,970 + GFF2788 0.42 +1.3 311,970 + GFF2788 0.42 +0.5 312,024 + GFF2788 0.45 +0.7 312,170 + GFF2788 0.53 +0.1 312,213 + GFF2788 0.56 +0.2
Or see this region's nucleotide sequence