Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF274 and GFF275 overlap by 1 nucleotides GFF275 and GFF276 are separated by 38 nucleotides GFF276 and GFF277 are separated by 11 nucleotides
GFF274 - Xaa-Pro dipeptidase PepQ (EC 3.4.13.9), at 50,523 to 51,854
GFF274
GFF275 - FIG000605: protein co-occurring with transport systems (COG1739), at 51,854 to 52,468
GFF275
GFF276 - Potassium uptake protein TrkH, at 52,507 to 53,958
GFF276
GFF277 - Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-), at 53,970 to 54,515
GFF277
Position (kb)
52
53
54 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 51.557 kb on - strand, within GFF274 at 51.557 kb on - strand, within GFF274 at 51.619 kb on - strand, within GFF274 at 51.684 kb on + strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.685 kb on - strand, within GFF274 at 51.794 kb on + strand at 51.853 kb on - strand at 51.922 kb on + strand, within GFF275 at 51.923 kb on - strand, within GFF275 at 51.928 kb on - strand, within GFF275 at 51.948 kb on + strand, within GFF275 at 51.949 kb on - strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.160 kb on + strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.161 kb on - strand, within GFF275 at 52.168 kb on + strand, within GFF275 at 52.202 kb on + strand, within GFF275 at 52.228 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.271 kb on - strand, within GFF275 at 52.287 kb on - strand, within GFF275 at 52.318 kb on - strand, within GFF275 at 52.467 kb on - strand at 53.067 kb on + strand, within GFF276 at 53.067 kb on + strand, within GFF276 at 53.071 kb on + strand, within GFF276 at 53.072 kb on - strand, within GFF276 at 53.072 kb on - strand, within GFF276 at 53.218 kb on - strand, within GFF276 at 53.260 kb on - strand, within GFF276 at 53.282 kb on + strand, within GFF276 at 53.283 kb on - strand, within GFF276 at 53.395 kb on - strand, within GFF276 at 53.398 kb on + strand, within GFF276 at 53.520 kb on - strand, within GFF276 at 53.567 kb on + strand, within GFF276 at 53.649 kb on + strand, within GFF276 at 53.652 kb on + strand, within GFF276 at 53.653 kb on - strand, within GFF276 at 53.653 kb on - strand, within GFF276 at 53.738 kb on + strand, within GFF276 at 53.740 kb on - strand, within GFF276 at 53.751 kb on + strand, within GFF276 at 53.805 kb on + strand, within GFF276 at 53.879 kb on + strand at 53.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 51,557 - GFF274 0.78 -0.2 51,557 - GFF274 0.78 +0.0 51,619 - GFF274 0.82 +0.6 51,684 + GFF274 0.87 +0.5 51,685 - GFF274 0.87 +0.4 51,685 - GFF274 0.87 +0.2 51,794 + +0.8 51,853 - +0.6 51,922 + GFF275 0.11 +0.2 51,923 - GFF275 0.11 +0.1 51,928 - GFF275 0.12 -0.2 51,948 + GFF275 0.15 +0.1 51,949 - GFF275 0.15 -0.3 52,160 + GFF275 0.50 +0.3 52,160 + GFF275 0.50 -0.0 52,160 + GFF275 0.50 -0.3 52,160 + GFF275 0.50 -0.1 52,160 + GFF275 0.50 +0.8 52,161 - GFF275 0.50 +0.4 52,161 - GFF275 0.50 -0.2 52,161 - GFF275 0.50 -0.4 52,168 + GFF275 0.51 +1.5 52,202 + GFF275 0.57 +0.2 52,228 - GFF275 0.61 +0.1 52,271 - GFF275 0.68 -0.7 52,271 - GFF275 0.68 +0.1 52,287 - GFF275 0.70 -0.4 52,318 - GFF275 0.75 +0.6 52,467 - +0.5 53,067 + GFF276 0.39 -2.0 53,067 + GFF276 0.39 -0.8 53,071 + GFF276 0.39 -0.7 53,072 - GFF276 0.39 +0.3 53,072 - GFF276 0.39 -3.1 53,218 - GFF276 0.49 -1.9 53,260 - GFF276 0.52 -0.9 53,282 + GFF276 0.53 +0.1 53,283 - GFF276 0.53 -2.2 53,395 - GFF276 0.61 -0.7 53,398 + GFF276 0.61 -2.6 53,520 - GFF276 0.70 -2.9 53,567 + GFF276 0.73 +0.2 53,649 + GFF276 0.79 -2.9 53,652 + GFF276 0.79 -2.2 53,653 - GFF276 0.79 -1.3 53,653 - GFF276 0.79 -0.5 53,738 + GFF276 0.85 -0.5 53,740 - GFF276 0.85 -1.2 53,751 + GFF276 0.86 -0.8 53,805 + GFF276 0.89 -0.8 53,879 + -1.7 53,913 - -1.1
Or see this region's nucleotide sequence