Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2700

Experiment: LB_plus_SM_buffer

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2699 and GFF2700 are separated by 121 nucleotidesGFF2700 and GFF2701 are separated by 86 nucleotides GFF2699 - FIG00637999: hypothetical protein, at 222,151 to 224,142 GFF2699 GFF2700 - FIG01045186: hypothetical protein, at 224,264 to 224,443 GFF2700 GFF2701 - Transcriptional regulatory protein YciT, at 224,530 to 225,282 GFF2701 Position (kb) 224 225Strain fitness (log2 ratio) -1 0 1at 223.294 kb on + strand, within GFF2699at 223.295 kb on - strand, within GFF2699at 223.419 kb on + strand, within GFF2699at 223.419 kb on + strand, within GFF2699at 223.458 kb on - strand, within GFF2699at 223.478 kb on + strand, within GFF2699at 223.478 kb on + strand, within GFF2699at 223.532 kb on - strand, within GFF2699at 223.586 kb on + strand, within GFF2699at 223.690 kb on - strand, within GFF2699at 223.923 kb on + strand, within GFF2699at 224.006 kb on + strandat 224.110 kb on + strandat 224.183 kb on + strandat 224.184 kb on - strandat 224.184 kb on - strandat 224.354 kb on - strand, within GFF2700at 224.529 kb on + strandat 224.529 kb on + strandat 224.666 kb on - strand, within GFF2701at 224.666 kb on - strand, within GFF2701at 224.670 kb on - strand, within GFF2701at 224.745 kb on - strand, within GFF2701at 224.884 kb on + strand, within GFF2701at 224.966 kb on + strand, within GFF2701

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer
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223,294 + GFF2699 0.57 -0.0
223,295 - GFF2699 0.57 +0.1
223,419 + GFF2699 0.64 -0.1
223,419 + GFF2699 0.64 +0.4
223,458 - GFF2699 0.66 +0.6
223,478 + GFF2699 0.67 +0.5
223,478 + GFF2699 0.67 +1.0
223,532 - GFF2699 0.69 +0.4
223,586 + GFF2699 0.72 +0.7
223,690 - GFF2699 0.77 +0.5
223,923 + GFF2699 0.89 +0.1
224,006 + -0.2
224,110 + -0.2
224,183 + +0.2
224,184 - +0.1
224,184 - +0.3
224,354 - GFF2700 0.50 -0.6
224,529 + -0.4
224,529 + -0.5
224,666 - GFF2701 0.18 +0.2
224,666 - GFF2701 0.18 +0.2
224,670 - GFF2701 0.19 -0.1
224,745 - GFF2701 0.29 -0.5
224,884 + GFF2701 0.47 +0.7
224,966 + GFF2701 0.58 -0.6

Or see this region's nucleotide sequence