Experiment: LB_plus_SM_buffer
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2663 and GFF2664 are separated by 137 nucleotides GFF2664 and GFF2665 are separated by 26 nucleotides GFF2665 and GFF2666 are separated by 74 nucleotides
GFF2663 - Thiol peroxidase, Tpx-type (EC 1.11.1.15), at 185,311 to 185,829
GFF2663
GFF2664 - FIG01200701: possible membrane protein, at 185,967 to 186,791
GFF2664
GFF2665 - Invasin-like protein, at 186,818 to 188,800
GFF2665
GFF2666 - FIG00545237: hypothetical protein, at 188,875 to 189,471
GFF2666
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -1
0
1 at 186.169 kb on - strand, within GFF2664 at 186.448 kb on - strand, within GFF2664 at 186.767 kb on - strand at 186.792 kb on - strand at 187.079 kb on - strand, within GFF2665 at 187.147 kb on + strand, within GFF2665 at 187.166 kb on + strand, within GFF2665 at 187.167 kb on - strand, within GFF2665 at 187.167 kb on - strand, within GFF2665 at 187.170 kb on - strand, within GFF2665 at 187.172 kb on + strand, within GFF2665 at 187.173 kb on - strand, within GFF2665 at 187.173 kb on - strand, within GFF2665 at 187.223 kb on + strand, within GFF2665 at 187.398 kb on + strand, within GFF2665 at 187.398 kb on + strand, within GFF2665 at 187.597 kb on + strand, within GFF2665 at 187.598 kb on - strand, within GFF2665 at 187.936 kb on - strand, within GFF2665 at 188.112 kb on + strand, within GFF2665 at 188.199 kb on - strand, within GFF2665 at 188.336 kb on - strand, within GFF2665 at 188.389 kb on + strand, within GFF2665 at 188.394 kb on + strand, within GFF2665 at 188.394 kb on + strand, within GFF2665 at 188.570 kb on + strand, within GFF2665 at 188.816 kb on + strand at 188.971 kb on - strand, within GFF2666 at 188.975 kb on + strand, within GFF2666 at 189.000 kb on + strand, within GFF2666 at 189.215 kb on - strand, within GFF2666 at 189.220 kb on - strand, within GFF2666 at 189.220 kb on - strand, within GFF2666 at 189.382 kb on - strand, within GFF2666 at 189.451 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer remove 186,169 - GFF2664 0.24 -0.2 186,448 - GFF2664 0.58 -0.6 186,767 - -0.5 186,792 - +0.2 187,079 - GFF2665 0.13 +1.1 187,147 + GFF2665 0.17 -0.1 187,166 + GFF2665 0.18 +0.2 187,167 - GFF2665 0.18 -0.1 187,167 - GFF2665 0.18 -0.2 187,170 - GFF2665 0.18 +0.1 187,172 + GFF2665 0.18 -0.5 187,173 - GFF2665 0.18 -0.4 187,173 - GFF2665 0.18 +0.2 187,223 + GFF2665 0.20 -0.0 187,398 + GFF2665 0.29 +0.1 187,398 + GFF2665 0.29 -0.7 187,597 + GFF2665 0.39 +0.6 187,598 - GFF2665 0.39 +0.4 187,936 - GFF2665 0.56 +1.1 188,112 + GFF2665 0.65 -0.2 188,199 - GFF2665 0.70 +0.5 188,336 - GFF2665 0.77 -0.2 188,389 + GFF2665 0.79 +0.9 188,394 + GFF2665 0.79 -0.0 188,394 + GFF2665 0.79 +0.4 188,570 + GFF2665 0.88 +0.2 188,816 + +0.4 188,971 - GFF2666 0.16 +0.1 188,975 + GFF2666 0.17 +0.3 189,000 + GFF2666 0.21 -0.0 189,215 - GFF2666 0.57 -0.1 189,220 - GFF2666 0.58 +0.1 189,220 - GFF2666 0.58 +0.1 189,382 - GFF2666 0.85 +0.0 189,451 - +1.3
Or see this region's nucleotide sequence